Browse Element(s) Details


OsAffx.6378.1.S1_at

Description tigr:9637.m02038
TID=OsAffx.6378.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2377010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g23750OsAffx.6376.1.S1_at10/119+14124906..14126182hypothetical protein
LOC_Os09g23760OsAffx.17865.1.S1_at11/119+14141914..14143375hypothetical protein
LOC_Os09g23770OsAffx.6378.1.S1_at10/119+14147038..14148472expressed protein
LOC_Os09g23780Os.56369.1.S1_at11/119+14152040..14153149expressed protein
LOC_Os09g23790NANA9+14169611..14175766retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6378.1.S1_at--496--3911Chr09:14148412..14148436 (25 bp)
CTGGATGGATCAGGCGCCTTGTCGA
LOC_Os09g23770
OsAffx.6378.1.S1_at--72--6451Chr09:14148405..14148429 (25 bp)
GATCAGGCGCCTTGTCGACAGCGGA
LOC_Os09g23770
OsAffx.6378.1.S1_at--597--9491Chr09:14148365..14148389 (25 bp)
TCTGCCGAGCAGAGCGACGAGCTTG
LOC_Os09g23770
OsAffx.6378.1.S1_at--941--8451Chr09:14148339..14148363 (25 bp)
TGGCCAGGGCCGCATCAGCAGAACA
LOC_Os09g23770
OsAffx.6378.1.S1_at--17--4971Chr09:14148328..14148352 (25 bp)
GCATCAGCAGAACAGAGCGTGTTCC
LOC_Os09g23770
OsAffx.6378.1.S1_at--575--211Chr09:14148289..14148313 (25 bp)
ATTTGGTCGAACAGGCCGCTCGCGG
LOC_Os09g23770
OsAffx.6378.1.S1_at--961--2951Chr09:14148258..14148282 (25 bp)
AAGGCCACGGGCAGAGCTTCCATGT
LOC_Os09g23770
OsAffx.6378.1.S1_at--985--1911Chr09:14148252..14148276 (25 bp)
ACGGGCAGAGCTTCCATGTTGCTGC
LOC_Os09g23770
OsAffx.6378.1.S1_at--428--731Chr09:14148237..14148261 (25 bp)
ATGTTGCTGCCGCTCTTTTCTTTCT
LOC_Os09g23770
OsAffx.6378.1.S1_at--271--2931NONE
AAGGAATGTATGTCCCATCTAAACA
NONE
OsAffx.6378.1.S1_at--537--2131Chr09:14147068..14147092 (25 bp)
ACAGGGTCAAGGACAACTGGCCATT
LOC_Os09g23770
Target Sequence 
CTGGATGGATCAGGCGCCTTGTCGACAGCGGAGACTGGAGAGGAGAGTCTGCCGAGCAGAGCGACGAGCTTGGTGGCCAG
GGCCGCATCAGCAGAACAGAGCGTGTTCCATCGCCGGCGGGGCATTTGGTCGAACAGGCCGCTCGCGGGGCAACAAGGCC
ACGGGCAGAGCTTCCATGTTGCTGCCGCTCTTTTCTTTCTTGTCACTGAAAGAAAGGGAAAACAAAAAGGAATGTATGTC
CCATCTAAACAGGGTCAAGGACAACTGGCCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6378.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis