Browse Element(s) Details


OsAffx.25688.1.S1_at

Description tigr:9631.m05110
TID=OsAffx.25688.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5223911/11homeodomain protein JUBEL1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g52220NANA3+29930378..29930908NA
LOC_Os03g52239OsAffx.25688.1.S1_at11/113+29953770..29964043homeodomain protein JUBEL1, putative, expressed
LOC_Os03g52239OsAffx.3581.1.S1_at10/113+29953770..29964043homeodomain protein JUBEL1, putative, expressed
LOC_Os03g52239OsAffx.17864.1.S1_x_at1/113+29953770..29964043homeodomain protein JUBEL1, putative, expressed
LOC_Os03g52258OsAffx.13466.1.S1_at10/113+29964436..29964755hypothetical protein
LOC_Os03g52280NANA3+29973887..29975263hypothetical protein
LOC_Os03g52284NANA3+29977524..29979158expressed protein
LOC_Os03g52290OsAffx.3582.1.S1_x_at11/113+29983078..29983773hypothetical protein
LOC_Os03g52300Os.9956.1.S1_at11/113+29984664..29987427expressed protein
LOC_Os03g52300OsAffx.6133.1.S1_at9/113+29984664..29987427expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25688.1.S1_at--1121--4951Chr03:29963396..29963420 (25 bp)
GCATCATGCATATGGCCCCCATTTA
LOC_Os03g52239
OsAffx.25688.1.S1_at--222--4191Chr03:29963412..29963502 (25 bp)
CCCCATTTACGTACGTCTCGAATTG
LOC_Os03g52239
OsAffx.25688.1.S1_at--236--9931Chr03:29963419..29963509 (25 bp)
TACGTACGTCTCGAATTGGTTCATC
LOC_Os03g52239
OsAffx.25688.1.S1_at--581--10811Chr03:29963500..29963524 (25 bp)
TTGGTTCATCAACGCCCGTGTCCGG
LOC_Os03g52239
OsAffx.25688.1.S1_at--12--4251Chr03:29963515..29963539 (25 bp)
CCGTGTCCGGCTATGGAAGCCCATG
LOC_Os03g52239
OsAffx.25688.1.S1_at--994--6171Chr03:29963543..29963567 (25 bp)
GAGGAGATGTACCAGCAAGAATGCA
LOC_Os03g52239
OsAffx.25688.1.S1_at--1107--391Chr03:29963655..29963679 (25 bp)
ATCAGCACAGGCACGGCCAGCTAAT
LOC_Os03g52239
OsAffx.25688.1.S1_at--170--2131Chr03:29963661..29963685 (25 bp)
ACAGGCACGGCCAGCTAATGGTAGA
LOC_Os03g52239
OsAffx.25688.1.S1_at--383--4351Chr03:29963671..29963695 (25 bp)
CCAGCTAATGGTAGAGCACGGCGGC
LOC_Os03g52239
OsAffx.25688.1.S1_at--142--771Chr03:29963720..29963744 (25 bp)
ATGTCGTCGCACAAGCACGAGCCCG
LOC_Os03g52239
OsAffx.25688.1.S1_at--116--10631Chr03:29963798..29963822 (25 bp)
TTCGTCGGCATCGACCCGGTGGAGC
LOC_Os03g52239
Target Sequence 
GCATCATGCATATGGCCCCCATTTACGTACGTCTCGAATTGGTTCATCAACGCCCGTGTCCGGCTATGGAAGCCCATGAT
CGAGGAGATGTACCAGCAAGAATGCAAGGAGCTCGAGGGCTCCTCCGGCGCCGGCGACGACCCCTCCGGCGCCGACGACA
CGCACTCGCCGACGACCACCGCCGCCGCGCATCATCAGCACAGGCACGGCCAGCTAATGGTAGAGCACGGCGGCGCGTCC
AGCGGCGGCGGCGCCGCCATGTCGTCGCACAAGCACGAGCCCGGCGTCGTCGCGGGGCCCTCCTCGTCGTCGGCGGCGGC
GGTGGCGGACGCCGCCTTCGTCGGCATCGACCCGGTGGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25688.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis