Browse Element(s) Details


OsAffx.13466.1.S1_at

Description tigr:9631.m05111
TID=OsAffx.13466.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5225810/11hypothetical protein
LOC_Os06g473001/11RNA-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g52239OsAffx.25688.1.S1_at11/113+29953770..29964043homeodomain protein JUBEL1, putative, expressed
LOC_Os03g52239OsAffx.3581.1.S1_at10/113+29953770..29964043homeodomain protein JUBEL1, putative, expressed
LOC_Os03g52239OsAffx.17864.1.S1_x_at1/113+29953770..29964043homeodomain protein JUBEL1, putative, expressed
LOC_Os03g52258OsAffx.13466.1.S1_at10/113+29964436..29964755hypothetical protein
LOC_Os03g52280NANA3+29973887..29975263hypothetical protein
LOC_Os03g52284NANA3+29977524..29979158expressed protein
LOC_Os03g52290OsAffx.3582.1.S1_x_at11/113+29983078..29983773hypothetical protein
LOC_Os03g52300Os.9956.1.S1_at11/113+29984664..29987427expressed protein
LOC_Os03g52300OsAffx.6133.1.S1_at9/113+29984664..29987427expressed protein
LOC_Os03g52310Os.7726.1.S1_at10/113+29989628..29993399hAT family dimerisation domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13466.1.S1_at--187--2311Chr03:29964698..29964722 (25 bp)
AAAGGAAAAGATGCACGCTCAACTT
LOC_Os03g52258
OsAffx.13466.1.S1_at--105--951Chr03:29964696..29964720 (25 bp)
AGGAAAAGATGCACGCTCAACTTGC
LOC_Os03g52258
OsAffx.13466.1.S1_at--851--2431Chr03:29964694..29964717 (24 bp)
AAAAGATGCACGCTCAACTTGCAGT
LOC_Os03g52258
OsAffx.13466.1.S1_at--960--2791NONE
AAGATGCACGCTCAACTTGCAGTTA
NONE
OsAffx.13466.1.S1_at--265--6331Chr03:29964694..29964713 (20 bp)
GATGCACGCTCAACTTGCAGTTACA
LOC_Os03g52258
OsAffx.13466.1.S1_at--743--651Chr03:29964536..29964712 (25 bp)
ATGCACGCTCAACTTGCAGTTACAG
LOC_Os03g52258
OsAffx.13466.1.S1_at--665--5091Chr03:29964534..29964710 (25 bp)
GCACGCTCAACTTGCAGTTACAGAG
LOC_Os03g52258
OsAffx.13466.1.S1_at--1142--1831Chr03:29964532..29964708 (25 bp)
ACGCTCAACTTGCAGTTACAGAGAT
LOC_Os03g52258
OsAffx.13466.1.S1_at--189--3272Chr06:28670835..28670989 (25 bp)
CAACTTGCAGTTACAGAGATGGAAA
LOC_Os06g47300
OsAffx.13466.1.S1_at--192--5491Chr03:29964502..29964526 (25 bp)
GAACATTAATAAGTATACACCAAGA
LOC_Os03g52258
OsAffx.13466.1.S1_at--937--8931Chr03:29964497..29964521 (25 bp)
TTAATAAGTATACACCAAGACCAAA
LOC_Os03g52258
Target Sequence 
AAAGGAAAAGATGCACGCTCAACTTGCAGTTACAGAGATGGAAAGAACATTAATAAGTATACACCAAGACCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13466.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis