Browse Element(s) Details


Os.50790.1.S1_at

Description gb:AK058575.1
DB_XREF= gi:32968593
TID=Os.50790.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50790 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-017-F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-017-F01, full insert sequence.
FL= gb:AK058575.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5232011/11SSXT protein containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g52280NANA3+29973887..29975263hypothetical protein
LOC_Os03g52284NANA3+29977524..29979158expressed protein
LOC_Os03g52290OsAffx.3582.1.S1_x_at11/113+29983078..29983773hypothetical protein
LOC_Os03g52300Os.9956.1.S1_at11/113+29984664..29987427expressed protein
LOC_Os03g52300OsAffx.6133.1.S1_at9/113+29984664..29987427expressed protein
LOC_Os03g52310Os.7726.1.S1_at10/113+29989628..29993399hAT family dimerisation domain containing protein, expressed
LOC_Os03g52320Os.50790.1.S1_at11/113+29995741..29999342SSXT protein containing protein, expressed
LOC_Os03g52330OsAffx.25690.1.S1_at10/113+30009207..30010173hypothetical protein
LOC_Os03g52340Os.27846.1.S1_at11/113+30012896..30016715Endoplasmic oxidoreductin 1 precursor, putative, expressed
LOC_Os03g52340Os.33341.2.S1_at1/113+30012896..30016715Endoplasmic oxidoreductin 1 precursor, putative, expressed
LOC_Os03g52350OsAffx.13467.1.S1_at9/113+30017256..30021314hypothetical protein
LOC_Os03g52350OsAffx.26881.2.S1_at1/113+30017256..30021314hypothetical protein
LOC_Os03g52350Os.27056.1.A1_at1/113+30017256..30021314hypothetical protein
LOC_Os03g52360Os.36176.1.S1_at2/113+30022141..30022484hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008283biological_processcell proliferation
GO:0048366biological_processleaf development
GO:0005634cellular_componentnucleus
GO:0003713molecular_functiontranscription coactivator activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50790.1.S1_at--124--7551Chr03:29996227..29996251 (25 bp)
GTGGCGCCGGTAACAGCATGATGAA
LOC_Os03g52320
Os.50790.1.S1_at--47--7431Chr03:29996195..29996219 (25 bp)
GTGTTCTCCGACTTCGGACGCGGCG
LOC_Os03g52320
Os.50790.1.S1_at--321--5291Chr03:29996063..29996087 (25 bp)
GAAGGCAGCTAGGTGGTTTAACTTA
LOC_Os03g52320
Os.50790.1.S1_at--1037--9771Chr03:29996030..29996054 (25 bp)
TAAGCTAGGCAGCTAGGTAGCCCAT
LOC_Os03g52320
Os.50790.1.S1_at--393--6731Chr03:29995910..29995934 (25 bp)
GTTTAGGTTTGGTAGGTCGATCCAT
LOC_Os03g52320
Os.50790.1.S1_at--278--7811Chr03:29995896..29995920 (25 bp)
GGTCGATCCATGGAACCTGTGTGGT
LOC_Os03g52320
Os.50790.1.S1_at--780--7491Chr03:29995870..29995894 (25 bp)
GTGGTGGCCTGATGCATGTTGCATT
LOC_Os03g52320
Os.50790.1.S1_at--1017--10231Chr03:29995847..29995871 (25 bp)
TTTGGTATCATGCAGAAGTCTCACT
LOC_Os03g52320
Os.50790.1.S1_at--658--5191Chr03:29995833..29995857 (25 bp)
GAAGTCTCACTTGTTTTGGAAAACG
LOC_Os03g52320
Os.50790.1.S1_at--980--2571Chr03:29995812..29995836 (25 bp)
AACGGATTGGCAGGTTCGTCTAATT
LOC_Os03g52320
Os.50790.1.S1_at--540--8671Chr03:29995758..29995782 (25 bp)
TGTGTGTTGCTGCACTGCAATGGAT
LOC_Os03g52320
Target Sequence 
GTGGCGCCGGTAACAGCATGATGAACGCCGGCGTGTTCTCCGACTTCGGACGCGGCGGCGGCGGCGGCGGCAAGGAGGGG
TCCACCTCGCTGTCCGTCGACGTCCGGGGCGCCAACTCCGGCGCCCAGAGCGGCGACGGGGAGTACCTCAAGGGCACCGA
GGAGGAAGGCAGCTAGGTGGTTTAACTTAGCTATAGCTAAGCTAGGCAGCTAGGTAGCCCATGAGGAGGGTAGCACCGTG
GTAGTAGCAGTAGTAGCTAGGAGACGGCGGCAATGGCGGTGACGGTGACGGCGATGTCGGTGGCGGTGGTGGCTAAGGTT
TAGGTTTGGTAGGTCGATCCATGGAACCTGTGTGGTGGTGGTGGCCTGATGCATGTTGCATTTGGTATCATGCAGAAGTC
TCACTTGTTTTGGAAAACGGATTGGCAGGTTCGTCTAATTAAGATGTGTTATTAGTAAGGGAATATATGTGTGTGTTGCT
GCACTGCAATGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50790.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis