Browse Element(s) Details


OsAffx.26881.2.S1_at

Description tigr:9631.m02858
TID=OsAffx.26881.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2933011/11hypothetical protein
LOC_Os03g523501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g29280NANA3+16626480..16627093hypothetical protein
LOC_Os03g29284NANA3+16627451..16628680NA
LOC_Os03g29290OsAffx.10637.3.S1_s_at10/113+16631052..16634706transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g29290OsAffx.10637.1.S1_s_at9/113+16631052..16634706transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g29290OsAffx.10637.4.S1_s_at7/113+16631052..16634706transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g29290OsAffx.10637.2.S1_at2/113+16631052..16634706transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g29310OsAffx.32056.1.S1_x_at5/113+16636629..16639651transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g29310OsAffx.32056.1.S1_at3/113+16636629..16639651transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g29330OsAffx.26881.2.S1_at11/113+16644403..16645626hypothetical protein
LOC_Os03g29340OsAffx.25274.1.S1_at11/113+16647820..16653082MAP kinase-activating protein C22orf5 homolog, putative, expressed
LOC_Os03g29350Os.11738.1.S1_s_at11/113+16650957..16659383von Willebrand factor type A domain containing protein, expressed
LOC_Os03g29360NANA3+16670193..16670705expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26881.2.S1_at--560--1651Chr03:16645221..16645245 (25 bp)
AGCCCAACCAATCGAGGTCTCAAAG
LOC_Os03g29330
OsAffx.26881.2.S1_at--987--10011Chr03:16645177..16645201 (25 bp)
TAGACACACTGTTCCAAATCCGGCA
LOC_Os03g29330
OsAffx.26881.2.S1_at--1054--8211Chr03:16645156..16645180 (25 bp)
GGCAAAACCCTTCTGTCGACTTGGT
LOC_Os03g29330
OsAffx.26881.2.S1_at--46--5051Chr03:16645126..16645150 (25 bp)
GCAGATGTGTGGTTAATTCAGCCAA
LOC_Os03g29330
OsAffx.26881.2.S1_at--417--3151Chr03:16645112..16645136 (25 bp)
AATTCAGCCAATGGTTCGCTCAGGT
LOC_Os03g29330
OsAffx.26881.2.S1_at--294--3251Chr03:16645074..16645098 (25 bp)
CAAGCCTCTGCTGCGATGGGAAAGA
LOC_Os03g29330
OsAffx.26881.2.S1_at--1058--5532Chr03:30017816..30017840 (25 bp)
GAAACTAAACATAGATGGCTCCTTT
LOC_Os03g52350
OsAffx.26881.2.S1_at--238--8491Chr03:16645017..16645041 (25 bp)
TGGCTCCTTTGACAGTAGTGCAGAG
LOC_Os03g29330
OsAffx.26881.2.S1_at--1056--5551Chr03:16644835..16644978 (25 bp)
GAAAGCATCTTTGTTTCCTGCAATT
LOC_Os03g29330
OsAffx.26881.2.S1_at--746--391Chr03:16644462..16644735 (25 bp)
ATCAGGAAAGTCATCGTTCTACGTG
LOC_Os03g29330
OsAffx.26881.2.S1_at--367--10751Chr03:16644434..16644458 (25 bp)
TTGACGTGGTAGTTGCAATCATAAC
LOC_Os03g29330
Target Sequence 
AGCCCAACCAATCGAGGTCTCAAAGAGATTCATTGTAAGCTATGTAGACACACTGTTCCAAATCCGGCAAAACCCTTCTG
TCGACTTGGTAAAGGGCAGATGTGTGGTTAATTCAGCCAATGGTTCGCTCAGGTCCCACGCGTCGCCCAAGCCTCTGCTG
CGATGGGAAAGACCACCAGTGGGGTGGATGAAACTAAACATAGATGGCTCCTTTGACAGTAGTGCAGAGAAAGGGGGTGT
CGGGGCAATTCTTTGGGATAGCGCTGGGAAAGCATCTTTGTTTCCTGCAATTCAGTGGACTTTACTCCCAATAGTGGTTG
AGACAGATTGTCTCACAATTCTTCATCTTCTTGATAGCAAGGAGAAGGATCGTTCGATGTTTGCTAGCATCATTCAGGAA
GCGAAGGCGCTTGTCGCTGGTGGTAACAGAGAGATTGTCATCAGGAAAGTCATCGTTCTACGTGGTATTGACGTGGTAGT
TGCAATCATAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26881.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis