Browse Element(s) Details


Os.11738.1.S1_s_at

Description gb:AK062571.1
DB_XREF= gi:32972589
TID=Os.11738.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11738 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-046-C06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-046-C06, full insert sequence.
FL= gb:AK062571.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2935011/11von Willebrand factor type A domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g29280NANA3+16626480..16627093hypothetical protein
LOC_Os03g29284NANA3+16627451..16628680NA
LOC_Os03g29290OsAffx.10637.3.S1_s_at10/113+16631052..16634706transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g29290OsAffx.10637.1.S1_s_at9/113+16631052..16634706transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g29290OsAffx.10637.4.S1_s_at7/113+16631052..16634706transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g29290OsAffx.10637.2.S1_at2/113+16631052..16634706transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g29310OsAffx.32056.1.S1_x_at5/113+16636629..16639651transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g29310OsAffx.32056.1.S1_at3/113+16636629..16639651transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g29330OsAffx.26881.2.S1_at11/113+16644403..16645626hypothetical protein
LOC_Os03g29340OsAffx.25274.1.S1_at11/113+16647820..16653082MAP kinase-activating protein C22orf5 homolog, putative, expressed
LOC_Os03g29350Os.11738.1.S1_s_at11/113+16650957..16659383von Willebrand factor type A domain containing protein, expressed
LOC_Os03g29360NANA3+16670193..16670705expressed protein
LOC_Os03g29370NANA3+16677876..16678643hypothetical protein
LOC_Os03g29380OsAffx.25276.1.S1_at11/113+16684201..16685551hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11738.1.S1_s_at--918--1951Chr03:16651511..16651535 (25 bp)
ACTGACGCTCGGGTTCGGTGACACA
LOC_Os03g29350
Os.11738.1.S1_s_at--41--5151Chr03:16651483..16651507 (25 bp)
GCAACGAGGGAGAACCTTTCCGCTG
LOC_Os03g29350
Os.11738.1.S1_s_at--364--6031Chr03:16651426..16651450 (25 bp)
GAGATGTTCGACAAGGCCGTCGGCT
LOC_Os03g29350
Os.11738.1.S1_s_at--628--4771Chr03:16651377..16651401 (25 bp)
GCTGCTGCATGTGCTTCATCAACAC
LOC_Os03g29350
Os.11738.1.S1_s_at--217--4911Chr03:16651365..16651389 (25 bp)
GCTTCATCAACACCTGCAGCAAGAT
LOC_Os03g29350
Os.11738.1.S1_s_at--179--7791Chr03:16651332..16651356 (25 bp)
GGTGCGCCATCGTCATGGTGCAGCT
LOC_Os03g29350
Os.11738.1.S1_s_at--1100--631Chr03:16651283..16651307 (25 bp)
ATGCTTCGAGTGCTGCTCTCTGTGC
LOC_Os03g29350
Os.11738.1.S1_s_at--777--9531Chr03:16651208..16651232 (25 bp)
TCTACTGTATAGGATGGGCACCACA
LOC_Os03g29350
Os.11738.1.S1_s_at--470--2331Chr03:16651159..16651183 (25 bp)
AAAGACCCTTGTGTGGATGTTTTGA
LOC_Os03g29350
Os.11738.1.S1_s_at--667--6271Chr03:16651144..16651168 (25 bp)
GATGTTTTGATATCGGCCGTCTGTA
LOC_Os03g29350
Os.11738.1.S1_s_at--326--5951Chr03:16651094..16651118 (25 bp)
GAGCACTGTCCATTTGATTTCAAGA
LOC_Os03g29350
Target Sequence 
ACTGACGCTCGGGTTCGGTGACACAGCTGCAACGAGGGAGAACCTTTCCGCTGGGTTCGGGGACACGAAACCACCAGAGA
GGTTCGAGATGTTCGACAAGGCCGTCGGCTGCTGCAGCCGCCTCACGGACTGCTGCTGCTGCATGTGCTTCATCAACACC
TGCAGCAAGATGAACGACCGGTGCGCCATCGTCATGGTGCAGCTGTGCGGCGCGCTCTCGTGCCTCGCATGCTTCGAGTG
CTGCTCTCTGTGCTGCGGCGGGTCTGACTGAGGTAGGACCAAATGCTGAAATGTGCATAGAATTCTACTGTATAGGATGG
GCACCACATATATTTGTATACAATAGTTCAAGAAAGACCCTTGTGTGGATGTTTTGATATCGGCCGTCTGTAAAAACCTA
TAAGATGGAAATCATCTGAGCACTGTCCATTTGATTTCAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11738.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis