Browse Element(s) Details


OsAffx.25276.1.S1_at

Description tigr:9631.m02864
TID=OsAffx.25276.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2938011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g29350Os.11738.1.S1_s_at11/113+16650957..16659383von Willebrand factor type A domain containing protein, expressed
LOC_Os03g29360NANA3+16670193..16670705expressed protein
LOC_Os03g29370NANA3+16677876..16678643hypothetical protein
LOC_Os03g29380OsAffx.25276.1.S1_at11/113+16684201..16685551hypothetical protein
LOC_Os03g29389NANA3+16694363..16695842hypothetical protein
LOC_Os03g29400OsAffx.13108.1.S1_at11/113+16702970..16703812hypothetical protein
LOC_Os03g29410Os.52616.1.A1_at11/113+16704081..16708989serine/threonine-protein kinase NAK, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25276.1.S1_at--618--5051Chr03:16684496..16684520 (25 bp)
GCAGCAACGAGGGACGCCGCAGCAG
LOC_Os03g29380
OsAffx.25276.1.S1_at--675--9032Chr03:16684525..16684549 (25 bp)
TGCACGCCGGGCACGCGCAGGAGCA
LOC_Os03g29380
OsAffx.25276.1.S1_at--174--1051Chr03:16684573..16684597 (25 bp)
AGGTGCAGCGGCACGAGCATCCCGC
LOC_Os03g29380
OsAffx.25276.1.S1_at--564--8251Chr03:16684705..16684729 (25 bp)
GGCAGCGACACGGACTCTTCGTTAA
LOC_Os03g29380
OsAffx.25276.1.S1_at--1095--5611Chr03:16684711..16684735 (25 bp)
GACACGGACTCTTCGTTAACGCCGC
LOC_Os03g29380
OsAffx.25276.1.S1_at--947--9791Chr03:16684727..16684751 (25 bp)
TAACGCCGCCCCACATGAGGAGGAG
LOC_Os03g29380
OsAffx.25276.1.S1_at--95--1511Chr03:16684786..16684810 (25 bp)
AGCAGCTCGGCCTCTTGAGGTTGAA
LOC_Os03g29380
OsAffx.25276.1.S1_at--477--1591Chr03:16684789..16684813 (25 bp)
AGCTCGGCCTCTTGAGGTTGAAGGA
LOC_Os03g29380
OsAffx.25276.1.S1_at--268--6371Chr03:16684862..16685360 (25 bp)
GATCCAGGAGAGTTTTTCAAGGCAT
LOC_Os03g29380
OsAffx.25276.1.S1_at--827--6011Chr03:16685346..16685367 (22 bp)
GAGAGTTTTTCAAGGCATAAGAGCC
LOC_Os03g29380
OsAffx.25276.1.S1_at--1058--8271Chr03:16685356..16685380 (25 bp)
GGCATAAGAGCCAATTAGTTAGTAT
LOC_Os03g29380
Target Sequence 
GCAGCAACGAGGGACGCCGCAGCAGCACCTGCACGCCGGGCACGCGCAGGAGCAGCCGCCGGGGCACGGGCACGGGCAGG
TGCAGCGGCACGAGCATCCCGCGCACGGCGGCGCGCAGCACGCGCACGGCGGGGAGCAGCTGCAGCTCGCGCACGCGCGG
ACGCCGACGCCGCCGCAGCAGCAGCGACGGCAGCAGCAGCTGCGGCGGCGGCAGCGACACGGACTCTTCGTTAACGCCGC
CCCACATGAGGAGGAGGAGGAGGAGCAGCAGTTGCAGTTGCAGTTGCAGCAGCAGCTCGGCCTCTTGAGGTTGAAGGAGG
AGGAGGAGGAGGATGAGCAGCCGCCGGCGGCGCTGCTGCAGCAGCAGATCCAGGAGAGTTTTTCAAGGCATAAGAGCCAA
TTAGTTAGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25276.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis