Browse Element(s) Details


Os.52616.1.A1_at

Description gb:AK068330.1
DB_XREF= gi:32978348
TID=Os.52616.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.52616 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013145E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013145E01, full insert sequence.
FL= gb:AK068330.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2941011/11serine/threonine-protein kinase NAK, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g29380OsAffx.25276.1.S1_at11/113+16684201..16685551hypothetical protein
LOC_Os03g29389NANA3+16694363..16695842hypothetical protein
LOC_Os03g29400OsAffx.13108.1.S1_at11/113+16702970..16703812hypothetical protein
LOC_Os03g29410Os.52616.1.A1_at11/113+16704081..16708989serine/threonine-protein kinase NAK, putative, expressed
LOC_Os03g29420OsAffx.3361.1.S1_at11/113+16720317..16721451hypothetical protein
LOC_Os03g29430Os.24648.1.A1_at1/113+16726136..16730428retrotransposon, putative, centromere-specific
LOC_Os03g29440NANA3+16733964..16736672retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52616.1.A1_at--755--4791Chr03:16704648..16704672 (25 bp)
GCTCCTGGCTCAAGGATCCACAGAA
LOC_Os03g29410
Os.52616.1.A1_at--1095--5271Chr03:16704626..16704650 (25 bp)
GAAGTTAAGCCGAGTCATGGACCCG
LOC_Os03g29410
Os.52616.1.A1_at--924--8531Chr03:16704597..16704621 (25 bp)
TGGAGGGCCAGTACTTCGCTACCGC
LOC_Os03g29410
Os.52616.1.A1_at--667--211Chr03:16704546..16704570 (25 bp)
ATAAGTGCCTGAGCGGTAACCCCAA
LOC_Os03g29410
Os.52616.1.A1_at--733--1131Chr03:16704500..16704524 (25 bp)
AGTCGTGAAAGACCTAGAGCCCCTC
LOC_Os03g29410
Os.52616.1.A1_at--91--3211Chr03:16704473..16704497 (25 bp)
CAATGTCACCGATGATGTCTCTGAT
LOC_Os03g29410
Os.52616.1.A1_at--999--7151Chr03:16704457..16704481 (25 bp)
GTCTCTGATGAGTCGGTGGCACCCA
LOC_Os03g29410
Os.52616.1.A1_at--377--7011Chr03:16704342..16704366 (25 bp)
GTAAAATGCGTTCACCCCAGAAGGT
LOC_Os03g29410
Os.52616.1.A1_at--595--6791Chr03:16704319..16704343 (25 bp)
GTCGTTAGGAGACGTCCAGGCCAAA
LOC_Os03g29410
Os.52616.1.A1_at--332--311Chr03:16704225..16704249 (25 bp)
ATCCGTAACCCGCAATGTAATGTTT
LOC_Os03g29410
Os.52616.1.A1_at--528--5591Chr03:16704088..16704112 (25 bp)
GAAATTTATTGGTCTTGGCCTCTTT
LOC_Os03g29410
Target Sequence 
GCTCCTGGCTCAAGGATCCACAGAAGTTAAGCCGAGTCATGGACCCGGCCCTGGAGGGCCAGTACTTCGCTACCGCGGCT
CATAAGGCGGCCCTGGTGGCGTATAAGTGCCTGAGCGGTAACCCCAAAAATAGACCGGACATGTGTCAAGTCGTGAAAGA
CCTAGAGCCCCTCCTCAATGTCACCGATGATGTCTCTGATGAGTCGGTGGCACCCATAGCCCCGGTAAGGGAGGATAATG
CTGTGAGAAAGGAAAGAACAGCAAGGAGAAGGCCCGGTGAGAGGGATGGTGGAAAACTTAGGCAAAGTAAAATGCGTTCA
CCCCAGAAGGTCGTTAGGAGACGTCCAGGCCAAAGCGAGGAGTTTTGGGTGTGGCATATGCCTGGAGAAGTAAAATGCTA
AATATCAAGTGTAATATATATATATCCGTAACCCGCAATGTAATGTTTTTGTGTAGTGACTGATGATGAGGATGTAAAAT
GTAGATGGTGGTGCAGCCGGTGGTCACTGGCCAGGAAGGATTGCACCCCCTGTAATTCCTTGTTTCTTTTCTCTTGGNNN
GAAATTTATTGGTCTTGGCCTCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52616.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis