Browse Element(s) Details


OsAffx.3361.1.S1_at

Description tigr:9631.m02868
TID=OsAffx.3361.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2942011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g29389NANA3+16694363..16695842hypothetical protein
LOC_Os03g29400OsAffx.13108.1.S1_at11/113+16702970..16703812hypothetical protein
LOC_Os03g29410Os.52616.1.A1_at11/113+16704081..16708989serine/threonine-protein kinase NAK, putative, expressed
LOC_Os03g29420OsAffx.3361.1.S1_at11/113+16720317..16721451hypothetical protein
LOC_Os03g29430Os.24648.1.A1_at1/113+16726136..16730428retrotransposon, putative, centromere-specific
LOC_Os03g29440NANA3+16733964..16736672retrotransposon protein, putative, unclassified
LOC_Os03g29460OsAffx.3363.1.S1_at11/113+16742191..1674290460S ribosomal protein L27a-3, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3361.1.S1_at--690--91Chr03:16721362..16721386 (25 bp)
ATTCCCTCTTAATTCTTTGGTGGCT
LOC_Os03g29420
OsAffx.3361.1.S1_at--948--10231Chr03:16721347..16721371 (25 bp)
TTTGGTGGCTTTTGTGGACTCATAC
LOC_Os03g29420
OsAffx.3361.1.S1_at--251--8131Chr03:16721332..16721356 (25 bp)
GGACTCATACAGGAACGGCACACTC
LOC_Os03g29420
OsAffx.3361.1.S1_at--401--3471Chr03:16721323..16721347 (25 bp)
CAGGAACGGCACACTCGGCGGCTTG
LOC_Os03g29420
OsAffx.3361.1.S1_at--984--9171Chr03:16721300..16721324 (25 bp)
TGCCGATGGGACGTGGCTTACCTGC
LOC_Os03g29420
OsAffx.3361.1.S1_at--596--8811Chr03:16721237..16721261 (25 bp)
TGTTGCCCGTCTCATACGCCTGTGA
LOC_Os03g29420
OsAffx.3361.1.S1_at--475--3571Chr03:16720769..16721249 (25 bp)
CATACGCCTGTGACCGGTGGATAAA
LOC_Os03g29420
OsAffx.3361.1.S1_at--484--7031Chr03:16720736..16720760 (25 bp)
GTAAGAATACAATCGGAGCCCCCGT
LOC_Os03g29420
OsAffx.3361.1.S1_at--500--4231Chr03:16720715..16720739 (25 bp)
CCGTTGATAATCATCGCCCTGTGGG
LOC_Os03g29420
OsAffx.3361.1.S1_at--556--8631Chr03:16720696..16720720 (25 bp)
TGTGGGACCCATCAACGCACTAGCC
LOC_Os03g29420
OsAffx.3361.1.S1_at--602--3712Chr02:2032182..2032309 (25 bp)
CTAGCCCACATGTCAGTCACAATAT
NONE
Target Sequence 
ATTCCCTCTTAATTCTTTGGTGGCTTTTGTGGACTCATACAGGAACGGCACACTCGGCGGCTTGCCGATGGGACGTGGCT
TACCTGCCCCCACTTCGCCTGACACGGGGCGGGGCGTGGGTGCGCTGTTGCCCGTCTCATACGCCTGTGACCGGTGGATA
AAAAATGCTTGTAAGAATACAATCGGAGCCCCCGTTGATAATCATCGCCCTGTGGGACCCATCAACGCACTAGCCCACAT
GTCAGTCACAATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3361.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis