Browse Element(s) Details


OsAffx.25274.1.S1_at

Description tigr:9631.m02859
TID=OsAffx.25274.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2934011/11MAP kinase-activating protein C22orf5 homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g29280NANA3+16626480..16627093hypothetical protein
LOC_Os03g29284NANA3+16627451..16628680NA
LOC_Os03g29290OsAffx.10637.3.S1_s_at10/113+16631052..16634706transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g29290OsAffx.10637.1.S1_s_at9/113+16631052..16634706transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g29290OsAffx.10637.4.S1_s_at7/113+16631052..16634706transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g29290OsAffx.10637.2.S1_at2/113+16631052..16634706transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g29310OsAffx.32056.1.S1_x_at5/113+16636629..16639651transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g29310OsAffx.32056.1.S1_at3/113+16636629..16639651transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g29330OsAffx.26881.2.S1_at11/113+16644403..16645626hypothetical protein
LOC_Os03g29340OsAffx.25274.1.S1_at11/113+16647820..16653082MAP kinase-activating protein C22orf5 homolog, putative, expressed
LOC_Os03g29350Os.11738.1.S1_s_at11/113+16650957..16659383von Willebrand factor type A domain containing protein, expressed
LOC_Os03g29360NANA3+16670193..16670705expressed protein
LOC_Os03g29370NANA3+16677876..16678643hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25274.1.S1_at--939--3391Chr03:16652492..16652516 (25 bp)
CAGCATATATCACACTTCATTCCAA
LOC_Os03g29340
OsAffx.25274.1.S1_at--874--331Chr03:16652520..16652544 (25 bp)
ATACAGTATCTCAATTGCATGCTGC
LOC_Os03g29340
OsAffx.25274.1.S1_at--799--9051Chr03:16652535..16652559 (25 bp)
TGCATGCTGCAAAGCCCAGTAGTAT
LOC_Os03g29340
OsAffx.25274.1.S1_at--62--5011Chr03:16652564..16652588 (25 bp)
GCAGGCAAAGATTACCTCATAATGC
LOC_Os03g29340
OsAffx.25274.1.S1_at--1098--8911Chr03:16652617..16652641 (25 bp)
TGCAGTGGACTGTGGTAAACCTCAT
LOC_Os03g29340
OsAffx.25274.1.S1_at--1012--2611Chr03:16652634..16652658 (25 bp)
AACCTCATTCCACTCTAGACAAGAA
LOC_Os03g29340
OsAffx.25274.1.S1_at--703--5871Chr03:16652774..16652798 (25 bp)
GAGCTGTTAAACTTGTCAAACCATC
LOC_Os03g29340
OsAffx.25274.1.S1_at--543--1731Chr03:16652793..16652817 (25 bp)
ACCATCAGACTGTACATGAAGCTTG
LOC_Os03g29340
OsAffx.25274.1.S1_at--912--5471Chr03:16652950..16652974 (25 bp)
GAACTTAAGAACGTCAAGCCACTAA
LOC_Os03g29340
OsAffx.25274.1.S1_at--25--6451Chr03:16652982..16653006 (25 bp)
GATCAAGCATTATCCCAGAACAATT
LOC_Os03g29340
OsAffx.25274.1.S1_at--91--151Chr03:16653004..16653028 (25 bp)
ATTACTTTACCTTCATCTCTAGTTG
LOC_Os03g29340
Target Sequence 
CAGCATATATCACACTTCATTCCAATACATACAGTATCTCAATTGCATGCTGCAAAGCCCAGTAGTATGCAAGCAGGCAA
AGATTACCTCATAATGCAGATTAAGCATAACTTTATAGCTCATAATGCAGTGGACTGTGGTAAACCTCATTCCACTCTAG
ACAAGAATTAAACAGAAATAGGTCCAGGAAAAAGGTTTAGAACATAACGATTGCAAACTTGTAATACCAAAATAACACAA
TAATGAAAGGAAGGTACTATGATTGTTTGCAAAGCATGGTTAGAGCTGTTAAACTTGTCAAACCATCAGACTGTACATGA
AGCTTGACATAAGTCATTAACTCATCCAAATATGACTATTTGCGAGGCATAATTAAACTTGTCAAACCACCAGACAGAAT
ATAAGTTTGATATAAATTCTGTACAGAGGGACTTGGATATAAATTTATCCAACTCACAGAACTTAAGAACGTCAAGCCAC
TAAACAATGGGATCAAGCATTATCCCAGAACAATTACTTTACCTTCATCTCTAGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25274.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis