Browse Element(s) Details


Os.27056.1.A1_at

Description gb:CB635908
DB_XREF= gi:29630899
DB_XREF=OSIIEb16M12.r
CLONE=OSIIEb16M12
TID=Os.27056.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.27056 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g523501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g52310Os.7726.1.S1_at10/113+29989628..29993399hAT family dimerisation domain containing protein, expressed
LOC_Os03g52320Os.50790.1.S1_at11/113+29995741..29999342SSXT protein containing protein, expressed
LOC_Os03g52330OsAffx.25690.1.S1_at10/113+30009207..30010173hypothetical protein
LOC_Os03g52340Os.27846.1.S1_at11/113+30012896..30016715Endoplasmic oxidoreductin 1 precursor, putative, expressed
LOC_Os03g52340Os.33341.2.S1_at1/113+30012896..30016715Endoplasmic oxidoreductin 1 precursor, putative, expressed
LOC_Os03g52350OsAffx.13467.1.S1_at9/113+30017256..30021314hypothetical protein
LOC_Os03g52350OsAffx.26881.2.S1_at1/113+30017256..30021314hypothetical protein
LOC_Os03g52350Os.27056.1.A1_at1/113+30017256..30021314hypothetical protein
LOC_Os03g52360Os.36176.1.S1_at2/113+30022141..30022484hypothetical protein
LOC_Os03g52370Os.16532.1.S1_at11/113+30025486..30026267expressed protein
LOC_Os03g52370Os.47327.1.S1_x_at1/113+30025486..30026267expressed protein
LOC_Os03g52380Os.47327.1.S1_x_at11/113+30026938..30027604expressed protein
LOC_Os03g52380Os.47327.1.S1_at11/113+30026938..30027604expressed protein
LOC_Os03g52390Os.6620.1.S1_at9/113+30028888..30029459type II proteinase inhibitor family protein, expressed
LOC_Os03g52400Os.27925.1.S1_at10/113+30031131..30031995Ribosomal protein L7/L12 C-terminal domain containing protein, expressed
LOC_Os03g52410Os.55394.1.S1_at11/113+30032893..30033513expressed protein
LOC_Os03g52410OsAffx.18426.1.S1_x_at1/113+30032893..30033513expressed protein
LOC_Os03g52420OsAffx.18673.1.S1_at1/113+30034519..30035254hypothetical protein
LOC_Os03g52430Os.20684.1.S1_at11/113+30036022..30040667Mitochondrial carrier protein, expressed
LOC_Os03g52450Os.5151.1.S1_at11/113+30044853..30049640CCT motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27056.1.A1_at--1136--2611Chr03:12827129..12827148 (20 bp)
AACCTCTTTACAACCGTAACTGCAG
NONE
Os.27056.1.A1_at--306--7051NONE
GTAACTGCAGTGTTTTCCTTTACTC
NONE
Os.27056.1.A1_at--1130--9231NONE
TCACTTCCCCGAAAACATTCAACAT
NONE
Os.27056.1.A1_at--528--2511NONE
AACATTATATTTCCTTTGCTCCGAG
NONE
Os.27056.1.A1_at--292--4332Chr04:16045449..16045470 (22 bp)
CCAAAGGTAGAATCCCTCTCACGTA
NONE
Os.27056.1.A1_at--611--2991NONE
AATGATTGGTTTCCAAGCTCGCCTC
NONE
Os.27056.1.A1_at--1039--7711NONE
GGGTGGGCGCTTAGCCATGTCCTAT
NONE
Os.27056.1.A1_at--197--772Chr04:16045611..16045631 (21 bp)
ATGTCCTATTCACTAGACCCGAATC
NONE
Os.27056.1.A1_at--212--1811NONE
ACCCGAATCCCCAAATGCATAACTG
NONE
Os.27056.1.A1_at--242--6471NONE
GATAACTGGCATCGGCACACTGCAT
NONE
Os.27056.1.A1_at--862--8211NONE
GGAATTATCAGAGCACACCTATATG
NONE
Target Sequence 
AACCTCTTTACAACCGTAACTGCAGTGTTTTCCTTTACTCCAAGAAGTACTCCCTTCCCAAGGAAGTACTTCTCTCACTT
CCCCGAAAACATTCAACATTATATTTCCTTTGCTCCGAGGAATCCTACCTTCCCCAAAGGTAGAATCCCTCTCACGTAAA
AACACTATACATTTTGGTACTAAAAAAATGATTGGTTTCCAAGCTCGCCTCTTCGAGGGACCTTCGCTCGTGGACAACCT
CGCTCCGGGTCTTACCCACCCTCGAGTCCAATCTCGGGTGGGCGCTTAGCCATGTCCTATTCACTAGACCCGAATCCCCA
AATGCATAACTGATGTGTTAGCTTCGATAACTGGCATCGGCACACTGCATACCTGTCACGTCCCAAAACGACTCTAAAAT
ACATCCTCTAAATTATGCCTAGAATAATTAAAATCCATGTGAAAGCCTCCAAAAATTAAAATGTGCAAAGTTAAAAGTCA
AATAAGGCTTGGAGGATTTTTGTATATTTCCTAAAAGCCTAAAATGTGTAAATTAATTTTAGTGGAATTATCAGAGCACA
CCTATATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27056.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis