Browse Element(s) Details


Os.5151.1.S1_at

Description gb:CB630582
DB_XREF= gi:29625571
DB_XREF=OSIIEb07J17.r
CLONE=OSIIEb07J17
TID=Os.5151.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.5151 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_564593.1 (A.thaliana) flowering protein CONSTANS, putative (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5245011/11CCT motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g52350OsAffx.13467.1.S1_at9/113+30017256..30021314hypothetical protein
LOC_Os03g52350OsAffx.26881.2.S1_at1/113+30017256..30021314hypothetical protein
LOC_Os03g52350Os.27056.1.A1_at1/113+30017256..30021314hypothetical protein
LOC_Os03g52360Os.36176.1.S1_at2/113+30022141..30022484hypothetical protein
LOC_Os03g52370Os.16532.1.S1_at11/113+30025486..30026267expressed protein
LOC_Os03g52370Os.47327.1.S1_x_at1/113+30025486..30026267expressed protein
LOC_Os03g52380Os.47327.1.S1_x_at11/113+30026938..30027604expressed protein
LOC_Os03g52380Os.47327.1.S1_at11/113+30026938..30027604expressed protein
LOC_Os03g52390Os.6620.1.S1_at9/113+30028888..30029459type II proteinase inhibitor family protein, expressed
LOC_Os03g52400Os.27925.1.S1_at10/113+30031131..30031995Ribosomal protein L7/L12 C-terminal domain containing protein, expressed
LOC_Os03g52410Os.55394.1.S1_at11/113+30032893..30033513expressed protein
LOC_Os03g52410OsAffx.18426.1.S1_x_at1/113+30032893..30033513expressed protein
LOC_Os03g52420OsAffx.18673.1.S1_at1/113+30034519..30035254hypothetical protein
LOC_Os03g52430Os.20684.1.S1_at11/113+30036022..30040667Mitochondrial carrier protein, expressed
LOC_Os03g52450Os.5151.1.S1_at11/113+30044853..30049640CCT motif family protein, expressed
LOC_Os03g52460Os.20397.1.S1_a_at10/113+30049980..30055132Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplast precursor, putative, expressed
LOC_Os03g52460Os.22699.1.S1_at1/113+30049980..30055132Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplast precursor, putative, expressed
LOC_Os03g52470Os.5965.1.S1_s_at11/113+30057048..30065387retrotransposon, putative, centromere-specific, expressed
LOC_Os03g52470OsAffx.25367.1.S1_at1/113+30057048..30065387retrotransposon, putative, centromere-specific, expressed
LOC_Os03g52490Os.15899.1.S1_at11/113+30070138..30073805expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5151.1.S1_at--568--6431Chr03:30045882..30046015 (25 bp)
GATCATATCCGAGAAACGCATTGCC
LOC_Os03g52450
Os.5151.1.S1_at--1020--2931Chr03:30045838..30045862 (25 bp)
AAGGCTTACTCCAGCAATGCGTCGT
LOC_Os03g52450
Os.5151.1.S1_at--1013--2891Chr03:30045799..30045823 (25 bp)
AAGGTCCCTCTGTAATGCCTGTGGC
LOC_Os03g52450
Os.5151.1.S1_at--1115--7571Chr03:30045604..30045628 (25 bp)
GGGCACCCTAAGAAGTCCTTTGAAT
LOC_Os03g52450
Os.5151.1.S1_at--1091--3271Chr03:30045574..30045598 (25 bp)
CAAAATGACTGTGCAGCATCCTGCT
LOC_Os03g52450
Os.5151.1.S1_at--658--6491Chr03:30045093..30045117 (25 bp)
GATAGCATGGCTACCTCGTGACAAA
LOC_Os03g52450
Os.5151.1.S1_at--729--8171Chr03:30045024..30045048 (25 bp)
GGAACTCCTGACTTTAGGATGGTAC
LOC_Os03g52450
Os.5151.1.S1_at--402--3271Chr03:30044981..30045005 (25 bp)
CAAAGATCAGCTCCGTTGCGAACGA
LOC_Os03g52450
Os.5151.1.S1_at--691--6331Chr03:30044958..30044982 (25 bp)
GATGCAGACGCATCGGCGCGCCATA
LOC_Os03g52450
Os.5151.1.S1_at--45--571Chr03:30044925..30044949 (25 bp)
ATCCATGTGTTGTTGTACACCCTAC
LOC_Os03g52450
Os.5151.1.S1_at--603--9951Chr03:30044903..30044927 (25 bp)
TACCCACTCATTCTGTACGATTTGA
LOC_Os03g52450
Target Sequence 
GATCATATCCGAGAAACGCATTGCCAAAATTGTGGCATCAGCTCAAGGCTTACTCCAGCAATGCGTCGTGGGCCAGCTGG
TCCAAGGTCCCTCTGTAATGCCTGTGGCCTAATGTGGGCAAACAAGGGCACCCTAAGAAGTCCTTTGAATGCCCCCAAAA
TGACTGTGCAGCATCCTGCTGATNTGAGTAAAACGGGTGATACAGATGNCAGCAAAGCAAATCTGTGTGCTGAGCATAAT
CAAACCACTATGAAAACTGACACTGAGATGGTGCCAGAGCAGGAGCAGAAGGCAGACGTGTTGCCNCCAACCAAAGAAGA
AGATAGCATGGCTACCTCGTGACAAAATGTTCAGACGCTTGTGTATAATTGATACGTAGGTTATTTTTCAGGAACTCCTG
ACTTTAGGATGGTACATAAGGCAACAGAACTAACAAAGATCAGCTCCGTTGCGAACGATGCAGACGCATCGGCGCGCCAT
ATTTATCNNATCCATGTGTTGTTGTACACCCTACCCACTCATTCTGTACGATTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5151.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis