Browse Element(s) Details


Os.55394.1.S1_at

Description gb:AK108001.1
DB_XREF= gi:32993210
TID=Os.55394.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55394 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-135-G06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-135-G06, full insert sequence.
FL= gb:AK108001.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5241011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g52330OsAffx.25690.1.S1_at10/113+30009207..30010173hypothetical protein
LOC_Os03g52340Os.27846.1.S1_at11/113+30012896..30016715Endoplasmic oxidoreductin 1 precursor, putative, expressed
LOC_Os03g52340Os.33341.2.S1_at1/113+30012896..30016715Endoplasmic oxidoreductin 1 precursor, putative, expressed
LOC_Os03g52350OsAffx.13467.1.S1_at9/113+30017256..30021314hypothetical protein
LOC_Os03g52350OsAffx.26881.2.S1_at1/113+30017256..30021314hypothetical protein
LOC_Os03g52350Os.27056.1.A1_at1/113+30017256..30021314hypothetical protein
LOC_Os03g52360Os.36176.1.S1_at2/113+30022141..30022484hypothetical protein
LOC_Os03g52370Os.16532.1.S1_at11/113+30025486..30026267expressed protein
LOC_Os03g52370Os.47327.1.S1_x_at1/113+30025486..30026267expressed protein
LOC_Os03g52380Os.47327.1.S1_x_at11/113+30026938..30027604expressed protein
LOC_Os03g52380Os.47327.1.S1_at11/113+30026938..30027604expressed protein
LOC_Os03g52390Os.6620.1.S1_at9/113+30028888..30029459type II proteinase inhibitor family protein, expressed
LOC_Os03g52400Os.27925.1.S1_at10/113+30031131..30031995Ribosomal protein L7/L12 C-terminal domain containing protein, expressed
LOC_Os03g52410Os.55394.1.S1_at11/113+30032893..30033513expressed protein
LOC_Os03g52410OsAffx.18426.1.S1_x_at1/113+30032893..30033513expressed protein
LOC_Os03g52420OsAffx.18673.1.S1_at1/113+30034519..30035254hypothetical protein
LOC_Os03g52430Os.20684.1.S1_at11/113+30036022..30040667Mitochondrial carrier protein, expressed
LOC_Os03g52450Os.5151.1.S1_at11/113+30044853..30049640CCT motif family protein, expressed
LOC_Os03g52460Os.20397.1.S1_a_at10/113+30049980..30055132Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplast precursor, putative, expressed
LOC_Os03g52460Os.22699.1.S1_at1/113+30049980..30055132Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplast precursor, putative, expressed
LOC_Os03g52470Os.5965.1.S1_s_at11/113+30057048..30065387retrotransposon, putative, centromere-specific, expressed
LOC_Os03g52470OsAffx.25367.1.S1_at1/113+30057048..30065387retrotransposon, putative, centromere-specific, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55394.1.S1_at--16--3151Chr03:30033442..30033466 (25 bp)
AATTCGATCGAGAGCGAGCCACGCT
LOC_Os03g52410
Os.55394.1.S1_at--710--6391Chr03:30033437..30033461 (25 bp)
GATCGAGAGCGAGCCACGCTTGCGT
LOC_Os03g52410
Os.55394.1.S1_at--871--4111Chr03:30033421..30033445 (25 bp)
CGCTTGCGTGCTTTGGAAGAAAATC
LOC_Os03g52410
Os.55394.1.S1_at--480--5371Chr03:30033406..30033430 (25 bp)
GAAGAAAATCATATATCAAGCAGCA
LOC_Os03g52410
Os.55394.1.S1_at--141--5071Chr03:30033378..30033402 (25 bp)
GCAGCTGTCGGAGATGTCGCGGTAC
LOC_Os03g52410
Os.55394.1.S1_at--870--3991Chr03:30033055..30033079 (25 bp)
CGTGAGCTAGGAGGAATCGATCGAT
LOC_Os03g52410
Os.55394.1.S1_at--625--3051Chr03:30033041..30033065 (25 bp)
AATCGATCGATCGACCTTAGCTTCT
LOC_Os03g52410
Os.55394.1.S1_at--283--6391Chr03:30033033..30033057 (25 bp)
GATCGACCTTAGCTTCTGCTCGGAG
LOC_Os03g52410
Os.55394.1.S1_at--554--4912Chr10:14292783..14292802 (20 bp)
GCTTCTGCTCGGAGAGGATTGTTTT
NONE
Os.55394.1.S1_at--479--6571Chr03:30032958..30032982 (25 bp)
GATTCCGTGAAGTGTATATATGTAC
LOC_Os03g52410
Os.55394.1.S1_at--266--6892Chr10:14292860..14292884 (25 bp)
GTATATATGTACACTCCATTCTTTT
NONE
Target Sequence 
AATTCGATCGAGAGCGAGCCACGCTTGCGTGCTTTGGAAGAAAATCATATATCAAGCAGCAGCAGCAGCTGTCGGAGATG
TCGCGGTACGTGGAGTTGCTGGACATGGGGGTGCGCGTCGCGGCGAGGTTCCACTCCCACTGCCCGCAGACGGCGCGCAT
GTACTACAAGCCGCCGCAGACGACGACGACGGCCGACGGCCGCCGCCGCCGCGGGGACGGCGCTGCGGGCAAGCAGGCGG
CGGCCGGCTTCGACGCGGTCTCGTCCGCCACGGCGGCGCGCCCGTTCGCGGCGGCGGGAGAGGAACTCGGCGGCTTCCGC
GCCACCGCGCCGTCGGGGTTTGACTTCGAGTTCGACACCGCGCAGGCCGTCGTCTACGACGTCGTCGCGTGAGCTAGGAG
GAATCGATCGATCGACCTTAGCTTCTGCTCGGAGAGGATTGTTTTTTTTCTCCGGGANCAATTTTTGACACAAGAGGGGA
ATTTGATTCCGTGAAGTGTATATATGTACACTCCATTCTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55394.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis