Browse Element(s) Details


OsAffx.13467.1.S1_at

Description tigr:9631.m05121
TID=OsAffx.13467.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g523509/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g52310Os.7726.1.S1_at10/113+29989628..29993399hAT family dimerisation domain containing protein, expressed
LOC_Os03g52320Os.50790.1.S1_at11/113+29995741..29999342SSXT protein containing protein, expressed
LOC_Os03g52330OsAffx.25690.1.S1_at10/113+30009207..30010173hypothetical protein
LOC_Os03g52340Os.27846.1.S1_at11/113+30012896..30016715Endoplasmic oxidoreductin 1 precursor, putative, expressed
LOC_Os03g52340Os.33341.2.S1_at1/113+30012896..30016715Endoplasmic oxidoreductin 1 precursor, putative, expressed
LOC_Os03g52350OsAffx.13467.1.S1_at9/113+30017256..30021314hypothetical protein
LOC_Os03g52350OsAffx.26881.2.S1_at1/113+30017256..30021314hypothetical protein
LOC_Os03g52350Os.27056.1.A1_at1/113+30017256..30021314hypothetical protein
LOC_Os03g52360Os.36176.1.S1_at2/113+30022141..30022484hypothetical protein
LOC_Os03g52370Os.16532.1.S1_at11/113+30025486..30026267expressed protein
LOC_Os03g52370Os.47327.1.S1_x_at1/113+30025486..30026267expressed protein
LOC_Os03g52380Os.47327.1.S1_x_at11/113+30026938..30027604expressed protein
LOC_Os03g52380Os.47327.1.S1_at11/113+30026938..30027604expressed protein
LOC_Os03g52390Os.6620.1.S1_at9/113+30028888..30029459type II proteinase inhibitor family protein, expressed
LOC_Os03g52400Os.27925.1.S1_at10/113+30031131..30031995Ribosomal protein L7/L12 C-terminal domain containing protein, expressed
LOC_Os03g52410Os.55394.1.S1_at11/113+30032893..30033513expressed protein
LOC_Os03g52410OsAffx.18426.1.S1_x_at1/113+30032893..30033513expressed protein
LOC_Os03g52420OsAffx.18673.1.S1_at1/113+30034519..30035254hypothetical protein
LOC_Os03g52430Os.20684.1.S1_at11/113+30036022..30040667Mitochondrial carrier protein, expressed
LOC_Os03g52450Os.5151.1.S1_at11/113+30044853..30049640CCT motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13467.1.S1_at--549--10071Chr03:30021244..30021268 (25 bp)
TAGTGGACGACGCAGTCCTTGCCGC
LOC_Os03g52350
OsAffx.13467.1.S1_at--1060--3311Chr03:30021208..30021232 (25 bp)
CACTTGCAGGCGCACCCGTAGAGCG
LOC_Os03g52350
OsAffx.13467.1.S1_at--537--3911NONE
CTGGACGGTTGCAGCAGGTGATATA
NONE
OsAffx.13467.1.S1_at--653--10191Chr03:30019094..30019117 (24 bp)
TATATTTGTGATCCTTCCAGACGCC
LOC_Os03g52350
OsAffx.13467.1.S1_at--964--1351Chr03:30019076..30019100 (25 bp)
AGACGCCGTCGACATGTCAAAAACT
LOC_Os03g52350
OsAffx.13467.1.S1_at--11--2431Chr03:30019057..30019081 (25 bp)
AAAACTATTCAACTCTCGCGCGAAG
LOC_Os03g52350
OsAffx.13467.1.S1_at--854--4211NONE
CCGCGTGCAACGTCTATATGCGTAT
NONE
OsAffx.13467.1.S1_at--214--4651Chr03:30018080..30018104 (25 bp)
GCGTATGAGTGTGCCATGTTCTTGA
LOC_Os03g52350
OsAffx.13467.1.S1_at--498--9611Chr03:30018019..30018043 (25 bp)
TCATCCATGATAAAGTAGCCCCGCC
LOC_Os03g52350
OsAffx.13467.1.S1_at--539--9991Chr03:30018004..30018028 (25 bp)
TAGCCCCGCCAATTGAGGTCTCAAA
LOC_Os03g52350
OsAffx.13467.1.S1_at--778--2851Chr03:30017530..30017554 (25 bp)
AAGTCGCTTGTTGCTGGCGGTGATA
LOC_Os03g52350
Target Sequence 
TAGTGGACGACGCAGTCCTTGCCGCCCGGCGGTGCGCACTTGCAGGCGCACCCGTAGAGCGCCTCGCCTGGACGGTTGCA
GCAGGTGATATATTTGTGATCCTTCCAGACGCCGTCGACATGTCAAAAACTATTCAACTCTCGCGCGAAGAAACGCCCCG
CGTGCAACGTCTATATGCGTATGAGTGTGCCATGTTCTTGATGGTTCTTTGGAGGAACTGGTTTGTGAGGAATGAACTCA
TCCATGATAAAGTAGCCCCGCCAATTGAGGTCTCAAAGAGATTCATTGAAGCGAAGTCGCTTGTTGCTGGCGGTGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13467.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis