Browse Element(s) Details

Os.20397.1.S1_a_at

Description

gb:AK105092.1
DB_XREF= gi:32990301
TID=Os.20397.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20397 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-047-H12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-047-H12, full insert sequence.
FL= gb:AK105092.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os03g52460	10/11	Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplast precursor, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os03g52370	Os.16532.1.S1_at	11/11	3	+	30025486..30026267	expressed protein
LOC_Os03g52370	Os.47327.1.S1_x_at	1/11	3	+	30025486..30026267	expressed protein
LOC_Os03g52380	Os.47327.1.S1_x_at	11/11	3	+	30026938..30027604	expressed protein
LOC_Os03g52380	Os.47327.1.S1_at	11/11	3	+	30026938..30027604	expressed protein
LOC_Os03g52390	Os.6620.1.S1_at	9/11	3	+	30028888..30029459	type II proteinase inhibitor family protein, expressed
LOC_Os03g52400	Os.27925.1.S1_at	10/11	3	+	30031131..30031995	Ribosomal protein L7/L12 C-terminal domain containing protein, expressed
LOC_Os03g52410	Os.55394.1.S1_at	11/11	3	+	30032893..30033513	expressed protein
LOC_Os03g52410	OsAffx.18426.1.S1_x_at	1/11	3	+	30032893..30033513	expressed protein
LOC_Os03g52420	OsAffx.18673.1.S1_at	1/11	3	+	30034519..30035254	hypothetical protein
LOC_Os03g52430	Os.20684.1.S1_at	11/11	3	+	30036022..30040667	Mitochondrial carrier protein, expressed
LOC_Os03g52450	Os.5151.1.S1_at	11/11	3	+	30044853..30049640	CCT motif family protein, expressed
LOC_Os03g52460	Os.20397.1.S1_a_at	10/11	3	+	30049980..30055132	Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplast precursor, putative, expressed
LOC_Os03g52460	Os.22699.1.S1_at	1/11	3	+	30049980..30055132	Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplast precursor, putative, expressed
LOC_Os03g52470	Os.5965.1.S1_s_at	11/11	3	+	30057048..30065387	retrotransposon, putative, centromere-specific, expressed
LOC_Os03g52470	OsAffx.25367.1.S1_at	1/11	3	+	30057048..30065387	retrotransposon, putative, centromere-specific, expressed
LOC_Os03g52490	Os.15899.1.S1_at	11/11	3	+	30070138..30073805	expressed protein
LOC_Os03g52500	NA	NA	3	+	30075318..30076233	hypothetical protein

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Gene Ontology Classification

GO id	Type	Name
GO:0019252	biological_process	starch biosynthesis
GO:0010170	cellular_component	glucose-1-phosphate adenylyltransferase complex
GO:0008878	molecular_function	glucose-1-phosphate adenylyltransferase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.20397.1.S1_a_at--772--695	1	Chr03:30050621..30050642 (22 bp)	GTAACAATTTCCAACTCTGAGGGTG	LOC_Os03g52460
Os.20397.1.S1_a_at--602--649	1	Chr03:30050339..30050363 (25 bp)	GATAGGACCTCTGAAGGCTTCTACA	LOC_Os03g52460
Os.20397.1.S1_a_at--155--93	1	Chr03:30050325..30050349 (25 bp)	AGGCTTCTACATCCGATCAGGCATC	LOC_Os03g52460
Os.20397.1.S1_a_at--844--643	1	Chr03:30050311..30050335 (25 bp)	GATCAGGCATCACCATCGTATTAAA	LOC_Os03g52460
Os.20397.1.S1_a_at--864--945	1	Chr03:30050257..30050281 (25 bp)	TCTGAGGTGGAATAAAGCCCTCCCT	LOC_Os03g52460
Os.20397.1.S1_a_at--425--243	1	Chr03:30050220..30050244 (25 bp)	AAAAGCCAGCCATGACCATTTGCGG	LOC_Os03g52460
Os.20397.1.S1_a_at--628--307	1	Chr03:30050181..30050205 (25 bp)	AATCATCAGAGCTCTTTGTTCTTAG	LOC_Os03g52460
Os.20397.1.S1_a_at--989--277	1	Chr03:30050139..30050163 (25 bp)	AAGAGCTTCTGCATGTCTGTACAAA	LOC_Os03g52460
Os.20397.1.S1_a_at--26--43	1	Chr03:30050114..30050138 (25 bp)	ATCATTGTCTCGTGAATCTACCGTG	LOC_Os03g52460
Os.20397.1.S1_a_at--94--379	1	Chr03:30050106..30050130 (25 bp)	CTCGTGAATCTACCGTGTGTGTTTT	LOC_Os03g52460
Os.20397.1.S1_a_at--626--625	1	Chr03:30049933..30049957 (25 bp)	GATGGGAATTTGACACAACCTTGAA	NONE

Target Sequence

GTAACAATTTCCAACTCTGAGGGTGTACAGGAAGCAGATAGGACCTCTGAAGGCTTCTACATCCGATCAGGCATCACCAT
CGTATTAAAGAACTCGATAATTGCAGATGGATTAGTCATCTGAGGTGGAATAAAGCCCTCCCTNATCCAACCAGAAAAAG
CCAGCCATGACCATTTGCGGCAGGAATAGAATAAAATCATCAGAGCTCTTTGTTCTTAGTTGTGTACTTAGCATTCAAGA
GCTTCTGCATGTCTGTACAAAATCATTGTCTCGTGAATCTACCGTGTGTGTTTTNACACTAAACACATGGTCATGAAGCT
NGAAAAAAAAAACNAAATTTTATGANNNNNNNNANNNNNNNNNNCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNTGTACTCTCTCCGTCAAAAAAAAAAAAACTTAATCTAGATGGGAATTTGACACAACCTTGAA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis