Browse Element(s) Details


Os.15899.1.S1_at

Description gb:AK071715.1
DB_XREF= gi:32981738
TID=Os.15899.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.15899 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023110G03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023110G03, full insert sequence.
FL= gb:AK059602.1 gb:AK071715.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5249011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g52450Os.5151.1.S1_at11/113+30044853..30049640CCT motif family protein, expressed
LOC_Os03g52460Os.20397.1.S1_a_at10/113+30049980..30055132Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplast precursor, putative, expressed
LOC_Os03g52460Os.22699.1.S1_at1/113+30049980..30055132Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplast precursor, putative, expressed
LOC_Os03g52470Os.5965.1.S1_s_at11/113+30057048..30065387retrotransposon, putative, centromere-specific, expressed
LOC_Os03g52470OsAffx.25367.1.S1_at1/113+30057048..30065387retrotransposon, putative, centromere-specific, expressed
LOC_Os03g52490Os.15899.1.S1_at11/113+30070138..30073805expressed protein
LOC_Os03g52500NANA3+30075318..30076233hypothetical protein
LOC_Os03g52510OsAffx.31069.1.S1_x_at1/113+30081866..30085006hypothetical protein
LOC_Os03g52520NANA3+30085958..30086560retrotransposon protein, putative, unclassified
LOC_Os03g52530NANA3+30089494..30092048retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g52540NANA3+30092514..30095417retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g52550NANA3+30095943..30098868retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15899.1.S1_at--373--9551Chr03:30070431..30070455 (25 bp)
TCTATTTATGTGTTGGGAGCCCTCA
LOC_Os03g52490
Os.15899.1.S1_at--886--6851Chr03:30070400..30070424 (25 bp)
GTTTGTTGTTTTCCCTGAGCGCGAG
LOC_Os03g52490
Os.15899.1.S1_at--370--8911Chr03:30070366..30070390 (25 bp)
TGAGCATAATGCCTTTTTCCCAAAG
LOC_Os03g52490
Os.15899.1.S1_at--272--2911Chr03:30070344..30070368 (25 bp)
AAGGTATCCTGTAGTCTTTCGATGA
LOC_Os03g52490
Os.15899.1.S1_at--784--6711Chr03:30070318..30070342 (25 bp)
GTTCGGGTATCATCCTGTAGTCAAT
LOC_Os03g52490
Os.15899.1.S1_at--121--3071Chr03:30070296..30070320 (25 bp)
AATCTTTCAGTGTTGGTTATCAGCT
LOC_Os03g52490
Os.15899.1.S1_at--963--10411Chr03:30070280..30070304 (25 bp)
TTATCAGCTGCTGGCGAGTTTTGCT
LOC_Os03g52490
Os.15899.1.S1_at--266--6811Chr03:30070263..30070287 (25 bp)
GTTTTGCTTGTTTCTCAATGGTCGA
LOC_Os03g52490
Os.15899.1.S1_at--1149--3011Chr03:30070236..30070260 (25 bp)
AATGCTGAGCATGCCTCTATGTTCA
LOC_Os03g52490
Os.15899.1.S1_at--64--611Chr03:30070212..30070236 (25 bp)
ATGCCCGTCGTATTTACCTGATGTT
LOC_Os03g52490
Os.15899.1.S1_at--27--3871Chr03:30070167..30070191 (25 bp)
CTGAGCAATCCCCTATGTTATTAAA
LOC_Os03g52490
Target Sequence 
TCTATTTATGTGTTGGGAGCCCTCATGTTTGGTTTGTTGTTTTCCCTGAGCGCGAGGTTTGGTTGTGAGCATAATGCCTT
TTTCCCAAAGGTATCCTGTAGTCTTTCGATGATGTTCGGGTATCATCCTGTAGTCAATCTTTCAGTGTTGGTTATCAGCT
GCTGGCGAGTTTTGCTTGTTTCTCAATGGTCGATGAATGCTGAGCATGCCTCTATGTTCATGCCCGTCGTATTTACCTGA
TGTTATTAAATTCATGCCTCTATGCTGAGCAATCCCCTATGTTATTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15899.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis