Browse Element(s) Details


OsAffx.25435.1.S1_at

Description tigr:9631.m03782
TID=OsAffx.25435.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g393905/11hypothetical protein
LOC_Os05g307202/11transposon protein, putative, unclassified
LOC_Os02g106701/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g39350Os.52731.1.S1_at3/113+21821591..21829145retrotransposon protein, putative, unclassified
LOC_Os03g39350OsAffx.22699.1.S1_x_at1/113+21821591..21829145retrotransposon protein, putative, unclassified
LOC_Os03g39356NANA3+21829479..21832151hypothetical protein
LOC_Os03g39362NANA3+21833540..21833854retrotransposon protein, putative, unclassified
LOC_Os03g39370OsAffx.7903.2.S1_x_at3/113+21835400..21836251hypothetical protein
LOC_Os03g39380NANA3+21836617..21836902hypothetical protein
LOC_Os03g39390OsAffx.25435.1.S1_at5/113+21840625..21841065hypothetical protein
LOC_Os03g39400Os.41248.4.S1_x_at3/113+21848018..21855102retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g39400OsAffx.10929.1.S1_x_at1/113+21848018..21855102retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g39400Os.40288.1.S1_x_at1/113+21848018..21855102retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g39416NANA3+21860963..21861236NA
LOC_Os03g39432Os.54081.1.S1_at11/113+21865013..21868415Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g39432OsAffx.13251.1.S1_at1/113+21865013..21868415Helix-loop-helix DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25435.1.S1_at--381--7791Chr03:21841401..21841425 (25 bp)
GGTCCACGCAATGTGTTTCCTCGGT
NONE
OsAffx.25435.1.S1_at--483--5191Chr03:21841394..21841418 (25 bp)
GCAATGTGTTTCCTCGGTTCCACCG
NONE
OsAffx.25435.1.S1_at--805--4211Chr03:21841368..21841392 (25 bp)
CCGCCTCATGGGAACAGCACAGAGC
NONE
OsAffx.25435.1.S1_at--925--7611Chr03:21841359..21841383 (25 bp)
GGGAACAGCACAGAGCCCACACTTG
NONE
OsAffx.25435.1.S1_at--511--10615Chr09:20500675..20500699 (25 bp)
TTCGTTCCAAACTCTCCTCAAAAAT
NONE
OsAffx.25435.1.S1_at--711--37910Chr09:20500688..20500712 (25 bp)
CTCCTCAAAAATTTCGGTCAGACCG
NONE
OsAffx.25435.1.S1_at--435--1794Chr08:10952950..10952983 (25 bp)
ACCGAGACCAAGACCGAATTTGCCG
NONE
OsAffx.25435.1.S1_at--306--5791Chr03:21840787..21840808 (22 bp)
GACCAAGACCGAATTTGCCGGTGGG
LOC_Os03g39390
OsAffx.25435.1.S1_at--439--3351Chr03:21840627..21840651 (25 bp)
CACCTGTCAGTGGGCATCGGGCGCT
LOC_Os03g39390
OsAffx.25435.1.S1_at--734--4691Chr03:21840416..21840438 (23 bp)
GCGGCGACAACGATGTGTTTTGCCA
NONE
OsAffx.25435.1.S1_at--702--8671Chr03:21840403..21840427 (25 bp)
TGTGTTTTGCCATGAGAGCTGCGTG
NONE
Target Sequence 
GGTCCACGCAATGTGTTTCCTCGGTTCCACCGCCCGCCTCATGGGAACAGCACAGAGCCCACACTTGCCTGCCTCCACCG
CGCCGCCGCCGCTGGCTCTGCCCTCCACCGCGCCGCCGCCCGCCTCCGCCCTCCACCGCGCCGCCGCCGCCGCCGTCCTC
CACCGCGCCACGGCCGACGCCGCCGTCCTCCACCACGCGGCGGCTGGCACCGTCCTCCACCGCGCCGCGGCCGCCGCTGC
CGCCCTCCACCGAGCGTTCCAAATTTTTTCGTTCCAAACTCTCCTCAAAAATTTCGGTCAGACCGAGACCAAGACCGAAT
TTGCCGGTGGGCCCACCTGTCAGTGGGCATCGGGCGCTGACCGGGCGGGGCCACGGCGCGGCGACAACGATGTGTTTTGC
CATGAGAGCTGCGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25435.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis