Browse Element(s) Details


Os.54081.1.S1_at

Description gb:AK101749.1
DB_XREF= gi:32986958
TID=Os.54081.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54081 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033061P20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033061P20, full insert sequence.
FL= gb:AK101749.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3943211/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g39390OsAffx.25435.1.S1_at5/113+21840625..21841065hypothetical protein
LOC_Os03g39400Os.41248.4.S1_x_at3/113+21848018..21855102retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g39400OsAffx.10929.1.S1_x_at1/113+21848018..21855102retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g39400Os.40288.1.S1_x_at1/113+21848018..21855102retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g39416NANA3+21860963..21861236NA
LOC_Os03g39432Os.54081.1.S1_at11/113+21865013..21868415Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g39432OsAffx.13251.1.S1_at1/113+21865013..21868415Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g39450NANA3+21876208..21881586retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g39460NANA3+21882439..21883104hypothetical protein
LOC_Os03g39470Os.45173.1.S1_x_at3/113+21884135..21886004retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g39470Os.54151.1.S1_x_at2/113+21884135..21886004retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g39490NANA3+21888344..21889365retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g39500OsAffx.22699.1.S1_x_at2/113+21891825..21896428retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54081.1.S1_at--478--3732Chr03:21868052..21868076 (25 bp)
CTACTTTCACCCTTTGGCAGATAAG
LOC_Os03g39432
Os.54081.1.S1_at--695--5771Chr03:21868076..21868100 (25 bp)
GACGAGACTGACTGGAACTCTTGTT
LOC_Os03g39432
Os.54081.1.S1_at--875--1671Chr03:21868115..21868139 (25 bp)
AGCCGAGACTGCCATGATCGTCCTG
LOC_Os03g39432
Os.54081.1.S1_at--346--511Chr03:21868155..21868179 (25 bp)
ATCGTCCCGAGGATCGATCGGTGGA
LOC_Os03g39432
Os.54081.1.S1_at--848--6551Chr03:21868187..21868211 (25 bp)
GATTCGGGAAACAGAGCTCCGTCGC
LOC_Os03g39432
Os.54081.1.S1_at--976--10551Chr03:21868221..21868245 (25 bp)
TTCTTGCTTTATTTCGTTCTCGATG
LOC_Os03g39432
Os.54081.1.S1_at--469--6231Chr03:21868242..21868266 (25 bp)
GATGGCTCTAGCTGCGTGCGTGCAT
LOC_Os03g39432
Os.54081.1.S1_at--1015--3491Chr03:21868264..21868288 (25 bp)
CATGGATTGTGTTGCTTTCTTTTTC
LOC_Os03g39432
Os.54081.1.S1_at--1142--5471Chr03:21868313..21868337 (25 bp)
GAACTTGCTGCTTTTATTTCTTGTT
LOC_Os03g39432
Os.54081.1.S1_at--872--10311Chr03:21868329..21868353 (25 bp)
TTTCTTGTTCCTTTCAATGGTGCCT
LOC_Os03g39432
Os.54081.1.S1_at--504--2971Chr03:21868344..21868368 (25 bp)
AATGGTGCCTCGTGTTGTAACTATC
LOC_Os03g39432
Target Sequence 
CTACTTTCACCCTTTGGCAGATAAGACGAGACTGACTGGAACTCTTGTTCGAAAAAGCCCAAAAGCCGAGACTGCCATGA
TCGTCCTGCCTGCCAACCTCTCGATCGTCCCGAGGATCGATCGGTGGAGAAGAAGGATTCGGGAAACAGAGCTCCGTCGC
CGCACGCTTTTCTTGCTTTATTTCGTTCTCGATGGCTCTAGCTGCGTGCGTGCATGGATTGTGTTGCTTTCTTTTTCTTT
TCTACTTCTTTTCTTTTTTCAGAACTTGCTGCTTTTATTTCTTGTTCCTTTCAATGGTGCCTCGTGTTGTAACTATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54081.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis