Browse Element(s) Details


OsAffx.13251.1.S1_at

Description tigr:9631.m03786
TID=OsAffx.13251.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g394321/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g39390OsAffx.25435.1.S1_at5/113+21840625..21841065hypothetical protein
LOC_Os03g39400Os.41248.4.S1_x_at3/113+21848018..21855102retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g39400OsAffx.10929.1.S1_x_at1/113+21848018..21855102retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g39400Os.40288.1.S1_x_at1/113+21848018..21855102retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g39416NANA3+21860963..21861236NA
LOC_Os03g39432Os.54081.1.S1_at11/113+21865013..21868415Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g39432OsAffx.13251.1.S1_at1/113+21865013..21868415Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g39450NANA3+21876208..21881586retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g39460NANA3+21882439..21883104hypothetical protein
LOC_Os03g39470Os.45173.1.S1_x_at3/113+21884135..21886004retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g39470Os.54151.1.S1_x_at2/113+21884135..21886004retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g39490NANA3+21888344..21889365retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g39500OsAffx.22699.1.S1_x_at2/113+21891825..21896428retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13251.1.S1_at--1083--7551Chr03:21864495..21864519 (25 bp)
GGGCCCTCATACTACTATTGCTTCG
NONE
OsAffx.13251.1.S1_at--745--4291Chr03:21864499..21864520 (22 bp)
CCTCATACTACTATTGCTTCGCCGA
NONE
OsAffx.13251.1.S1_at--715--9531Chr03:21864501..21864981 (25 bp)
TCATACTACTATTGCTTCGCCGACG
NONE
OsAffx.13251.1.S1_at--362--331Chr03:21864503..21864983 (25 bp)
ATACTACTATTGCTTCGCCGACGAG
NONE
OsAffx.13251.1.S1_at--886--3591Chr03:21864515..21864995 (25 bp)
CTTCGCCGACGAGAAAAAGGAGAGG
NONE
OsAffx.13251.1.S1_at--707--2291Chr03:21864986..21865010 (25 bp)
AAAGGAGAGGAACACCAATCCGAGC
NONE
OsAffx.13251.1.S1_at--619--8051Chr03:21864989..21865013 (25 bp)
GGAGAGGAACACCAATCCGAGCATC
NONE
OsAffx.13251.1.S1_at--694--6191Chr03:21864992..21865016 (25 bp)
GAGGAACACCAATCCGAGCATCCAA
NONE
OsAffx.13251.1.S1_at--599--931Chr03:21864993..21865017 (25 bp)
AGGAACACCAATCCGAGCATCCAAC
NONE
OsAffx.13251.1.S1_at--731--2151Chr03:21864997..21865021 (25 bp)
ACACCAATCCGAGCATCCAACGCTT
NONE
OsAffx.13251.1.S1_at--197--10671Chr03:21865020..21865314 (25 bp)
TTCCTCGTCCGCTGGAAGAGGCAAG
LOC_Os03g39432
Target Sequence 
GGGCCCTCATACTACTATTGCTTCGCCGACGAGAAAAAGGAGAGGAACACCAATCCGAGCATCCAACGCTTCCTCGTCCG
CTGGAAGAGGCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13251.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis