Browse Element(s) Details


Os.11526.1.S2_at

Description gb:AK106682.1
DB_XREF= gi:32991891
TID=Os.11526.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11526 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-114-B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-114-B07, full insert sequence.
FL= gb:AK064792.1 gb:AK106682.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g107101/11Hsp20/alpha crystallin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10660Os.26628.1.S1_at11/112+5611553..5614433Glycosyl hydrolases family 17 protein, expressed
LOC_Os02g10670OsAffx.11978.1.S1_at11/112+5617300..5619951expressed protein
LOC_Os02g10670OsAffx.25435.1.S1_at1/112+5617300..5619951expressed protein
LOC_Os02g10670OsAffx.6133.1.S1_at1/112+5617300..5619951expressed protein
LOC_Os02g10680NANA2+5622522..5622924hypothetical protein
LOC_Os02g10690Os.9051.1.S1_at11/112+5623354..5627318Targeting protein for Xklp2 containing protein, expressed
LOC_Os02g10700Os.6093.1.S1_a_at11/112+5628117..5631254Leucine Rich Repeat family protein, expressed
LOC_Os02g10710Os.11526.1.S2_at1/112+5639315..5640360Hsp20/alpha crystallin family protein, expressed
LOC_Os02g10720Os.11526.1.S1_at11/112+5640780..5644590expressed protein
LOC_Os02g10730OsAffx.24189.1.S1_at11/112+5654435..5655458expressed protein
LOC_Os02g10740OsAffx.24190.1.S1_at11/112+5663557..5668337Mitochondrial carrier protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009408biological_processresponse to heat
GO:0009507cellular_componentchloroplast
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11526.1.S2_at--325--8191Chr02:5639550..5639574 (25 bp)
GGAAGGACGACGTCCGCGTCTACGT
LOC_Os02g10710
Os.11526.1.S2_at--497--3391Chr02:5639287..5639311 (25 bp)
CAGCGTGGACTGAGCCTGGCTGCTT
NONE
Os.11526.1.S2_at--368--4452Chr10:21114107..21114126 (20 bp)
GCCTCGTTTGTATGGGCCTTTATCC
NONE
Os.11526.1.S2_at--664--10351Chr02:5639242..5639266 (25 bp)
TTTATCCCGGCCCATCTTGTGTATG
NONE
Os.11526.1.S2_at--881--3551Chr02:5639230..5639254 (25 bp)
CATCTTGTGTATGGGCCTGGATTCT
NONE
Os.11526.1.S2_at--625--7551Chr02:5639218..5639242 (25 bp)
GGGCCTGGATTCTGTAATTAAGTAC
NONE
Os.11526.1.S2_at--655--9731Chr02:5639200..5639224 (25 bp)
TAAGTACTGTATGGGCCTACTACCA
NONE
Os.11526.1.S2_at--745--7551Chr02:5639188..5639212 (25 bp)
GGGCCTACTACCATAATGTGGCATT
NONE
Os.11526.1.S2_at--1128--2971Chr02:5639174..5639198 (25 bp)
AATGTGGCATTCTGGAGTTCTTTAT
NONE
Os.11526.1.S2_at--248--8051Chr02:5639161..5639185 (25 bp)
GGAGTTCTTTATTAATGCCACATTA
NONE
Os.11526.1.S2_at--120--10451Chr02:5639139..5639163 (25 bp)
TTACCCTTTATGAATGGCCTCGTTC
NONE
Target Sequence 
GGAAGGACGACGTCCGCGTCTACGTGGACGACGGCGTGCTCGCCATCCACGGCGAGAAGCGCGACGTGGTGGAGGAGGAC
CNNNNNNNNGACGGCGACGGCGAGTGCTGGGCGGCGGCGACGTACCACGCCGGCCTGCTCCTCCCGGAGGACGCGGTGGC
GGAGGGGATCACGGCGGAGGTGAGGGACGGCGTGCTGCACGTCACCGTGCCCCGCTCGCCGGAGAGGAAGAGGAGCGTCA
CCGAGGTCAAGGTGCGGTAGTAGCAGCGTGGACTGAGCCTGGCTGCTTGGGCCTCGTTTGTATGGGCCTTTATCCCGGCC
CATCTTGTGTATGGGCCTGGATTCTGTAATTAAGTACTGTATGGGCCTACTACCATAATGTGGCATTCTGGAGTTCTTTA
TTAATGCCACATTACCCTTTATGAATGGCCTCGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11526.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis