Browse Element(s) Details


OsAffx.24189.1.S1_at

Description gb:AK068381.1
DB_XREF= gi:32978399
TID=OsAffx.24189.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013147P03, full insert sequence.
FL= gb:AK068381.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1073011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10700Os.6093.1.S1_a_at11/112+5628117..5631254Leucine Rich Repeat family protein, expressed
LOC_Os02g10710Os.11526.1.S2_at1/112+5639315..5640360Hsp20/alpha crystallin family protein, expressed
LOC_Os02g10720Os.11526.1.S1_at11/112+5640780..5644590expressed protein
LOC_Os02g10730OsAffx.24189.1.S1_at11/112+5654435..5655458expressed protein
LOC_Os02g10740OsAffx.24190.1.S1_at11/112+5663557..5668337Mitochondrial carrier protein, expressed
LOC_Os02g10750OsAffx.28048.1.S1_at10/112+5670091..5672334hypothetical protein
LOC_Os02g10750OsAffx.28048.2.S1_at1/112+5670091..5672334hypothetical protein
LOC_Os02g10750OsAffx.28048.2.S1_x_at1/112+5670091..5672334hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24189.1.S1_at--919--6671Chr02:5654764..5654788 (25 bp)
GTTGCTCGATTGATTAGGCTCTCGC
LOC_Os02g10730
OsAffx.24189.1.S1_at--1006--10091Chr02:5654750..5654774 (25 bp)
TAGGCTCTCGCAATTAAGCTAATTA
LOC_Os02g10730
OsAffx.24189.1.S1_at--924--2691Chr02:5654735..5654759 (25 bp)
AAGCTAATTAATCATCATCCTCCGC
LOC_Os02g10730
OsAffx.24189.1.S1_at--316--571Chr02:5654719..5654743 (25 bp)
ATCCTCCGCTTGCTTTTGGTTAACT
LOC_Os02g10730
OsAffx.24189.1.S1_at--779--10311Chr02:5654668..5654692 (25 bp)
TTTCTCGTGCGTCTTTGCTTCGAAA
LOC_Os02g10730
OsAffx.24189.1.S1_at--11--3451Chr02:5654627..5654651 (25 bp)
CAGTTGTTGACTTTGTGTGGATCCA
LOC_Os02g10730
OsAffx.24189.1.S1_at--407--8671Chr02:5654614..5654638 (25 bp)
TGTGTGGATCCAGTACATCTCTACT
LOC_Os02g10730
OsAffx.24189.1.S1_at--177--6951Chr02:5654555..5654579 (25 bp)
GTAGTTTTTGAATCTCCTCTAGGTT
LOC_Os02g10730
OsAffx.24189.1.S1_at--868--451Chr02:5654544..5654568 (25 bp)
ATCTCCTCTAGGTTTGTAAATACTC
LOC_Os02g10730
OsAffx.24189.1.S1_at--102--7051Chr02:5654529..5654553 (25 bp)
GTAAATACTCGATTTCTTCTCTTTT
LOC_Os02g10730
OsAffx.24189.1.S1_at--180--2792Chr12:21892856..21892954 (24 bp)
AAGAGACGATTTGCCATGTCAAAAG
NONE
Target Sequence 
GTTGCTCGATTGATTAGGCTCTCGCAATTAAGCTAATTAATCATCATCCTCCGCTTGCTTTTGGTTAACTTTTTTTTTGC
TTGTTTTTTCTCTCTCTTTCTCGTGCGTCTTTGCTTCGAAAGACAGGAAGACAGAGGCAGTTGTTGACTTTGTGTGGATC
CAGTACATCTCTACTGTACAGTGGATGGATTAGTATATTTTATTTTTAAGTAGTTTTTGAATCTCCTCTAGGTTTGTAAA
TACTCGATTTCTTCTCTTTTTTATCTCAAAGAAAAGGGAAAAAAAGAGACGATTTGCCATGTCAAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24189.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis