Browse Element(s) Details


Os.11526.1.S1_at

Description gb:AK064792.1
DB_XREF= gi:32974810
TID=Os.11526.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11526 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-114-B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000C11, full insert sequence.
FL= gb:AK064792.1 gb:AK106682.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1072011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10670OsAffx.11978.1.S1_at11/112+5617300..5619951expressed protein
LOC_Os02g10670OsAffx.25435.1.S1_at1/112+5617300..5619951expressed protein
LOC_Os02g10670OsAffx.6133.1.S1_at1/112+5617300..5619951expressed protein
LOC_Os02g10680NANA2+5622522..5622924hypothetical protein
LOC_Os02g10690Os.9051.1.S1_at11/112+5623354..5627318Targeting protein for Xklp2 containing protein, expressed
LOC_Os02g10700Os.6093.1.S1_a_at11/112+5628117..5631254Leucine Rich Repeat family protein, expressed
LOC_Os02g10710Os.11526.1.S2_at1/112+5639315..5640360Hsp20/alpha crystallin family protein, expressed
LOC_Os02g10720Os.11526.1.S1_at11/112+5640780..5644590expressed protein
LOC_Os02g10730OsAffx.24189.1.S1_at11/112+5654435..5655458expressed protein
LOC_Os02g10740OsAffx.24190.1.S1_at11/112+5663557..5668337Mitochondrial carrier protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11526.1.S1_at--230--10071Chr02:5642718..5642742 (25 bp)
TAGTGCCATGCAATCTCAGCGTAGC
LOC_Os02g10720
Os.11526.1.S1_at--365--9671Chr02:5642703..5642727 (25 bp)
TCAGCGTAGCATGTCTTCAATCAGT
LOC_Os02g10720
Os.11526.1.S1_at--1147--6991Chr02:5642680..5642704 (25 bp)
GTACGGCAGCACAATCGAGCGATCA
LOC_Os02g10720
Os.11526.1.S1_at--1083--8191Chr02:5642645..5642669 (25 bp)
GGAAGTAGCACCAACCCAAATGAGT
LOC_Os02g10720
Os.11526.1.S1_at--1020--2911Chr02:5641987..5642010 (24 bp)
AAGGACTTCTCCTGTGGAACCAGAC
LOC_Os02g10720
Os.11526.1.S1_at--555--931Chr02:5641937..5641961 (25 bp)
AGGCACAATTCTCAGCGTCAACAAC
LOC_Os02g10720
Os.11526.1.S1_at--1025--2671Chr02:5641063..5641183 (25 bp)
AAGCGATCCCTCTTGGTGAAATGGT
LOC_Os02g10720
Os.11526.1.S1_at--1041--791Chr02:5641043..5641067 (25 bp)
ATGGTAGATTTCCTCGTGGACGGCT
LOC_Os02g10720
Os.11526.1.S1_at--337--6471Chr02:5640894..5640918 (25 bp)
GATAACTGCGGTATTCCTGGAGACA
LOC_Os02g10720
Os.11526.1.S1_at--143--8011Chr02:5640869..5640893 (25 bp)
GGATGGCATCCCTATCTTAAGTAAA
LOC_Os02g10720
Os.11526.1.S1_at--787--10231Chr02:5640801..5640825 (25 bp)
TATTGTGATATCTTCTCGCTGTGCA
LOC_Os02g10720
Target Sequence 
TAGTGCCATGCAATCTCAGCGTAGCATGTCTTCAATCAGTACGGCAGCACAATCGAGCGATCAGCATGGAGCTGGAAGTA
GCACCAACCCAAATGAGTTTGTAAATCAAGGACTTCTCCTGTGGAACCAGACTAGGCAACAGTGGGTTGGAAACAGAAGG
CACAATTCTCAGCGTCAACAACCTCGAGAGCCAAAAATAAGTTGGAATGCTACATATGAGAGCCTTCTAGGAAGCACAAA
ACCATTTCCACAAGCGATCCCTCTTGGTGAAATGGTAGATTTCCTCGTGGACGGCTGGGAGCAGGAAGGCCTATATGATT
AGTGGGTTAAATGAGTGATGAAGGGTGTTGTTTGTGGGGTCAAATTATGAATCACCGAGAATGTACTCAGAAAAACTTCA
GCCTTTCAAAGCTTGTGGGTGATAACTGCGGTATTCCTGGAGACAGGATGGCATCCCTATCTTAAGTAAACGTAACATAT
TCTTTACTGCTAATTGTGTTAACATAAGTTTCATATTGTGATATCTTCTCGCTGTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11526.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis