Browse Element(s) Details


OsAffx.28048.1.S1_at

Description tigr:9630.m00998
TID=OsAffx.28048.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1075010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10730OsAffx.24189.1.S1_at11/112+5654435..5655458expressed protein
LOC_Os02g10740OsAffx.24190.1.S1_at11/112+5663557..5668337Mitochondrial carrier protein, expressed
LOC_Os02g10750OsAffx.28048.1.S1_at10/112+5670091..5672334hypothetical protein
LOC_Os02g10750OsAffx.28048.2.S1_at1/112+5670091..5672334hypothetical protein
LOC_Os02g10750OsAffx.28048.2.S1_x_at1/112+5670091..5672334hypothetical protein
LOC_Os02g10770Os.50235.1.S1_a_at11/112+5686730..5697834DEAD/DEAH box helicase family protein, putative, expressed
LOC_Os02g10770Os.50235.2.S1_at10/112+5686730..5697834DEAD/DEAH box helicase family protein, putative, expressed
LOC_Os02g10770OsAffx.14035.1.S1_at1/112+5686730..5697834DEAD/DEAH box helicase family protein, putative, expressed
LOC_Os02g10760NANA2+5688749..5689589AP2 domain-containing transcription factor family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28048.1.S1_at--1152--4911Chr02:5670825..5670849 (25 bp)
GCTTGCCATTTTGTTTGACGCTTGT
LOC_Os02g10750
OsAffx.28048.1.S1_at--172--10771Chr02:5670811..5670835 (25 bp)
TTGACGCTTGTGTTGTGCTTGCCAA
LOC_Os02g10750
OsAffx.28048.1.S1_at--932--8671Chr02:5670798..5670822 (25 bp)
TGTGCTTGCCAAGCTTTTTGTGCGT
LOC_Os02g10750
OsAffx.28048.1.S1_at--1115--3231Chr02:5670789..5670813 (25 bp)
CAAGCTTTTTGTGCGTCTCAGGACA
LOC_Os02g10750
OsAffx.28048.1.S1_at--837--7291Chr02:5670779..5670803 (25 bp)
GTGCGTCTCAGGACATTCGGAGCTG
LOC_Os02g10750
OsAffx.28048.1.S1_at--532--10611NONE
TTCGGAGCTGACAGGTGGATCGCAC
NONE
OsAffx.28048.1.S1_at--537--7511Chr02:5670223..5670247 (25 bp)
GTGGATCGCACACATGACAGCCCAA
LOC_Os02g10750
OsAffx.28048.1.S1_at--669--5631Chr02:5670208..5670232 (25 bp)
GACAGCCCAAAAGAGGTTTGCTATT
LOC_Os02g10750
OsAffx.28048.1.S1_at--420--1331Chr02:5670197..5670221 (25 bp)
AGAGGTTTGCTATTGCTAAAGGACA
LOC_Os02g10750
OsAffx.28048.1.S1_at--123--2691Chr02:5670173..5670197 (25 bp)
AAGCTGGTGATCTCCAGAAGCCTGA
LOC_Os02g10750
OsAffx.28048.1.S1_at--238--2471Chr02:5670130..5670154 (25 bp)
AACACACCTAGAACATTCCATTCTC
LOC_Os02g10750
Target Sequence 
GCTTGCCATTTTGTTTGACGCTTGTGTTGTGCTTGCCAAGCTTTTTGTGCGTCTCAGGACATTCGGAGCTGACAGGTGGA
TCGCACACATGACAGCCCAAAAGAGGTTTGCTATTGCTAAAGGACAAGCTGGTGATCTCCAGAAGCCTGAAGAGAAGAAT
AATACAGTAACACACCTAGAACATTCCATTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28048.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis