Browse Element(s) Details


Os.50235.2.S1_at

Description gb:AK110871.1
DB_XREF= gi:32996080
TID=Os.50235.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50235 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-172-E08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-172-E08, full insert sequence.
FL= gb:AK110871.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1077010/11DEAD/DEAH box helicase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10740OsAffx.24190.1.S1_at11/112+5663557..5668337Mitochondrial carrier protein, expressed
LOC_Os02g10750OsAffx.28048.1.S1_at10/112+5670091..5672334hypothetical protein
LOC_Os02g10750OsAffx.28048.2.S1_at1/112+5670091..5672334hypothetical protein
LOC_Os02g10750OsAffx.28048.2.S1_x_at1/112+5670091..5672334hypothetical protein
LOC_Os02g10770Os.50235.1.S1_a_at11/112+5686730..5697834DEAD/DEAH box helicase family protein, putative, expressed
LOC_Os02g10770Os.50235.2.S1_at10/112+5686730..5697834DEAD/DEAH box helicase family protein, putative, expressed
LOC_Os02g10770OsAffx.14035.1.S1_at1/112+5686730..5697834DEAD/DEAH box helicase family protein, putative, expressed
LOC_Os02g10760NANA2+5688749..5689589AP2 domain-containing transcription factor family protein, putative, expressed
LOC_Os02g10780Os.15304.1.A1_at11/112+5706636..5709119ids4, putative, expressed
LOC_Os02g10790Os.53264.1.S1_x_at11/112+5709733..5732172expressed protein
LOC_Os02g10790OsAffx.11980.1.S1_at9/112+5709733..5732172expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005524molecular_functionATP binding
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50235.2.S1_at--471--2151Chr02:5689332..5689356 (25 bp)
ACACGCCAATGTGGGACTTCTCGGG
LOC_Os02g10770
Os.50235.2.S1_at--1105--1471Chr02:5689266..5689290 (25 bp)
AGCACTTGCGGAGCTTAGCACTGAG
LOC_Os02g10770
Os.50235.2.S1_at--1018--3051Chr02:5689241..5689265 (25 bp)
AATCTGTGACAGGTTGCCCGCGGAG
LOC_Os02g10770
Os.50235.2.S1_at--526--1271Chr02:5689165..5689189 (25 bp)
AGATCACCGGTGGAGTTCCTCTGCA
LOC_Os02g10770
Os.50235.2.S1_at--336--2311NONE
AAAGGCTTGCAGTCCCATTTCATGG
NONE
Os.50235.2.S1_at--798--6071Chr02:5686885..5686909 (25 bp)
GAGTACTTCGTACACCGTATCAACA
LOC_Os02g10770
Os.50235.2.S1_at--990--2831Chr02:5686857..5686881 (25 bp)
AAGTATCTGAACAGTCTGCCTGCAA
LOC_Os02g10770
Os.50235.2.S1_at--978--8471Chr02:5686828..5686852 (25 bp)
TGGCGGCTCGTCATATTTCACTAAT
LOC_Os02g10770
Os.50235.2.S1_at--119--2571Chr02:5686802..5686826 (25 bp)
AACTGTCCTTTGCTGCTACAGATGT
LOC_Os02g10770
Os.50235.2.S1_at--907--6591Chr02:5686758..5686782 (25 bp)
GATTGATGGAAGTTCGTTGCCCCTG
LOC_Os02g10770
Os.50235.2.S1_at--117--6691Chr02:5686743..5686767 (25 bp)
GTTGCCCCTGTCGACTGATTAATTA
LOC_Os02g10770
Target Sequence 
ACACGCCAATGTGGGACTTCTCGGGGTCGAGGCGGAGGCAGGTTAAGGACGGAGATGGCGCCTTGCAGCACTTGCGGAGC
TTAGCACTGAGAATCTGTGACAGGTTGCCCGCGGAGGAGTTCCTGCTACCGCCATTGCTACGGGCGTCCTGGTCTGCGGC
CGTGGCGAGATCACCGGTGGAGTTCCTCTGCACGGGGAAGTTGGTCTTGGCGTTGCGGCCACTCATCAGCACAGCAGCCT
CATCGTAGGCTCGCGCAGCCTCCTCGGCCGTCTCAAAGGCTTGCAGTCCCATTTCATGGCAAGAGTACTTCGTACACCGT
ATCAACATTGAAGTATCTGAACAGTCTGCCTGCAATAATTGGCGGCTCGTCATATTTCACTAATCAACTGTCCTTTGCTG
CTACAGATGTGTTCTGTAAAAGTGATTCAGATTGATGGAAGTTCGTTGCCCCTGTCGACTGATTAATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50235.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis