Browse Element(s) Details


OsAffx.11980.1.S1_at

Description tigr:9630.m01002
TID=OsAffx.11980.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to gene_id:MWD22.15
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g107909/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10770Os.50235.1.S1_a_at11/112+5686730..5697834DEAD/DEAH box helicase family protein, putative, expressed
LOC_Os02g10770Os.50235.2.S1_at10/112+5686730..5697834DEAD/DEAH box helicase family protein, putative, expressed
LOC_Os02g10770OsAffx.14035.1.S1_at1/112+5686730..5697834DEAD/DEAH box helicase family protein, putative, expressed
LOC_Os02g10760NANA2+5688749..5689589AP2 domain-containing transcription factor family protein, putative, expressed
LOC_Os02g10780Os.15304.1.A1_at11/112+5706636..5709119ids4, putative, expressed
LOC_Os02g10790Os.53264.1.S1_x_at11/112+5709733..5732172expressed protein
LOC_Os02g10790OsAffx.11980.1.S1_at9/112+5709733..5732172expressed protein
LOC_Os02g10800Os.4975.1.S1_at11/112+5736608..5738792Brittle-1 protein, chloroplast precursor, putative, expressed
LOC_Os02g10810Os.9295.1.S1_at10/112+5740412..5742437expressed protein
LOC_Os02g10810Os.6721.1.S1_x_at1/112+5740412..5742437expressed protein
LOC_Os02g10820Os.47337.1.S1_at11/112+5744792..5748139expressed protein
LOC_Os02g10820Os.55842.1.S1_at1/112+5744792..5748139expressed protein
LOC_Os02g10830NANA2+5748604..5749500satase isoform I, putative
LOC_Os02g10840Os.6191.2.S1_x_at11/112+5750577..5753676transposon protein, putative, unclassified, expressed
LOC_Os02g10840Os.6191.1.S1_at11/112+5750577..5753676transposon protein, putative, unclassified, expressed
LOC_Os02g10840Os.6191.2.S1_at11/112+5750577..5753676transposon protein, putative, unclassified, expressed
LOC_Os02g10850OsAffx.11982.1.S1_at11/112+5755371..5758098Kelch motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11980.1.S1_at--55--6511Chr02:5713555..5713579 (25 bp)
GATAGTGTTTGCCTTGTGCTTCAGC
LOC_Os02g10790
OsAffx.11980.1.S1_at--364--10431Chr02:5713529..5713553 (25 bp)
TTATCTCCTACCTATATGTTCTGGC
LOC_Os02g10790
OsAffx.11980.1.S1_at--462--7951NONE
GGATATGCGGTTTCAAATTTCGTAT
NONE
OsAffx.11980.1.S1_at--566--3211Chr02:5711334..5711358 (25 bp)
CAAGATTGTATCTCTCCCAACGATA
LOC_Os02g10790
OsAffx.11980.1.S1_at--760--291Chr02:5710621..5710645 (25 bp)
ATAGAATTGTGTTGCATGGCCGGCA
LOC_Os02g10790
OsAffx.11980.1.S1_at--231--9791Chr02:5710581..5710605 (25 bp)
TAACCCTTCTACTCCAAATCGCAGA
LOC_Os02g10790
OsAffx.11980.1.S1_at--423--1471Chr02:5710559..5710583 (25 bp)
AGAATGCGCTGTCACTATTCTCCTT
LOC_Os02g10790
OsAffx.11980.1.S1_at--83--711Chr02:5710393..5710417 (25 bp)
ATGAGTTGCTTCCTATCCTGGAGAG
LOC_Os02g10790
OsAffx.11980.1.S1_at--171--4871NONE
GCTAGAGCATTTTACGGAGCCAGAT
NONE
OsAffx.11980.1.S1_at--655--8091Chr02:5709851..5709873 (23 bp)
GGAGCCAGATGCAAGTTTCCATCTT
LOC_Os02g10790
OsAffx.11980.1.S1_at--191--10751Chr02:5709771..5709792 (22 bp)
TTGAAGATTGCATACCCTGAACTCT
LOC_Os02g10790
Target Sequence 
GATAGTGTTTGCCTTGTGCTTCAGCCTTATCTCCTACCTATATGTTCTGGCTACAAAGAAGGATATGCGGTTTCAAATTT
CGTATGATGATACTACTGAAGGTCAGCAGCAACCAACACTACAACTGATTTCAGATCTTCTAAACTCAATAACAGTTGCT
ATGGAAAGAGTAGCTGAAGAAAAATATATGTTGCTAAATAAGATTCGTGACTTAAATGAGTTATCTAGGAAGGAGGTTGA
TGATATAATAAAATTATGCATGAAACAAGATTGTATCTCTCCCAACGATAACATCCGTAAAAGGAGGTTCATTGCAATGA
TAGAATTGTGTTGCATGGCCGGCAACCGAGGCCAGCTCATAACCCTTCTACTCCAAATCGCAGAATGCGCTGTCACTATT
CTCCTTGTTCATTTTCAAGACGAGTCTTGTGCAAAAGATATTTCTTCATTTTCTGATGAGTTGCTTCCTATCCTGGAGAG
GCTAGAGCATTTTACGGAGCCAGATGCAAGTTTCCATCTTTTGAAGATTGCATACCCTGAACTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11980.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis