Browse Element(s) Details


Os.4975.1.S1_at

Description gb:AK107368.1
DB_XREF= gi:32992577
TID=Os.4975.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.4975 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-127-B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-127-B01, full insert sequence.
FL= gb:AK107368.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1080011/11Brittle-1 protein, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10790Os.53264.1.S1_x_at11/112+5709733..5732172expressed protein
LOC_Os02g10790OsAffx.11980.1.S1_at9/112+5709733..5732172expressed protein
LOC_Os02g10800Os.4975.1.S1_at11/112+5736608..5738792Brittle-1 protein, chloroplast precursor, putative, expressed
LOC_Os02g10810Os.9295.1.S1_at10/112+5740412..5742437expressed protein
LOC_Os02g10810Os.6721.1.S1_x_at1/112+5740412..5742437expressed protein
LOC_Os02g10820Os.47337.1.S1_at11/112+5744792..5748139expressed protein
LOC_Os02g10820Os.55842.1.S1_at1/112+5744792..5748139expressed protein
LOC_Os02g10830NANA2+5748604..5749500satase isoform I, putative
LOC_Os02g10840Os.6191.2.S1_x_at11/112+5750577..5753676transposon protein, putative, unclassified, expressed
LOC_Os02g10840Os.6191.1.S1_at11/112+5750577..5753676transposon protein, putative, unclassified, expressed
LOC_Os02g10840Os.6191.2.S1_at11/112+5750577..5753676transposon protein, putative, unclassified, expressed
LOC_Os02g10850OsAffx.11982.1.S1_at11/112+5755371..5758098Kelch motif family protein, expressed
LOC_Os02g10860OsAffx.2569.1.S1_s_at11/112+5760633..5763645TGACG-motif binding factor, putative, expressed
LOC_Os02g10860Os.8561.1.S1_at11/112+5760633..5763645TGACG-motif binding factor, putative, expressed
LOC_Os02g10860OsAffx.2569.1.S1_at9/112+5760633..5763645TGACG-motif binding factor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006839biological_processmitochondrial transport
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005215molecular_functiontransporter activity
GO:0005488molecular_functionbinding
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4975.1.S1_at--817--1031Chr02:5738239..5738263 (25 bp)
AGGTCGCCCGCAAGCAGATGCAGGT
LOC_Os02g10800
Os.4975.1.S1_at--1138--8271Chr02:5738394..5738418 (25 bp)
GGCATCTCCTTCATGTGCTACGAGG
LOC_Os02g10800
Os.4975.1.S1_at--1060--10531Chr02:5738403..5738427 (25 bp)
TTCATGTGCTACGAGGCGCTCAAGA
LOC_Os02g10800
Os.4975.1.S1_at--127--891Chr02:5738416..5738440 (25 bp)
AGGCGCTCAAGAAGGTACTCGTCGA
LOC_Os02g10800
Os.4975.1.S1_at--575--3991Chr02:5738500..5738524 (25 bp)
CGTGAAGTGGTTTGGGCTCGCCGGC
LOC_Os02g10800
Os.4975.1.S1_at--542--2831Chr02:5738613..5738637 (25 bp)
AAGTTTGTGGTTGCTGTGGTTTGAA
LOC_Os02g10800
Os.4975.1.S1_at--10--431Chr02:5738647..5738671 (25 bp)
ATCATCGTAGGATTCGATTTCCTCT
LOC_Os02g10800
Os.4975.1.S1_at--316--1011Chr02:5738655..5738679 (25 bp)
AGGATTCGATTTCCTCTGTTCAGGA
LOC_Os02g10800
Os.4975.1.S1_at--350--6531Chr02:5738662..5738686 (25 bp)
GATTTCCTCTGTTCAGGAGGCATAT
LOC_Os02g10800
Os.4975.1.S1_at--686--6872Chr02:5738739..5738763 (25 bp)
GTATTGCATTTCAAGTTTGTTTTCA
LOC_Os02g10800
Os.4975.1.S1_at--80--352Chr02:5738764..5738788 (25 bp)
ATAAAATCTATGTATTTCCAGTTCA
LOC_Os02g10800
Target Sequence 
AGGTCGCCCGCAAGCAGATGCAGGTCGGCNGCCGTCGGCGGCCNGGCAGGTGTACCGCCACGTGCTCCACGCCNATGTAC
TGCATCCTCCGCGGCGAGGGCNGCCGCGGGCCTCTACCGCGGCCTCGGCCCCAGCTGCATCAAGCTCATGCCCGCCGCCG
GCATCTCCTTCATGTGCTACGAGGCGCTCAAGAAGGTACTCGTCGAGGAGGAGGCGGCGCCGGAGCTGGAGGCGGAGTGC
GCGGAGGAGATCAAGGAGAAGGTTGCGTGAAGTGGTTTGGGCTCGCCGGCGCCGGAGAAGATGGTGGCTGATTGTGCATG
GGTGTGATGATGGAAGCATGCAANAAAANAANAAAAAAAANGAAGCAAAAAATGGAGAGAAGTTTGTGGTTGCTGTGGTT
TGAAGTTGGATGAATCATCGTAGGATTCGATTTCCTCTGTTCAGGAGGCATATGGTGTGTTTTCAATGAAGTGATGCATT
TCAAGATTGTTTTCAATATATCTATGTATTGCATTTCAAGTTTGTTTTCAATAAAATCTATGTATTTCCAGTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4975.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis