Browse Element(s) Details


Os.6191.1.S1_at

Description gb:AK102082.1
DB_XREF= gi:32987291
TID=Os.6191.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6191 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-156-G04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033082K12, full insert sequence.
FL= gb:AK102813.1 gb:AK102082.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1084011/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10790Os.53264.1.S1_x_at11/112+5709733..5732172expressed protein
LOC_Os02g10790OsAffx.11980.1.S1_at9/112+5709733..5732172expressed protein
LOC_Os02g10800Os.4975.1.S1_at11/112+5736608..5738792Brittle-1 protein, chloroplast precursor, putative, expressed
LOC_Os02g10810Os.9295.1.S1_at10/112+5740412..5742437expressed protein
LOC_Os02g10810Os.6721.1.S1_x_at1/112+5740412..5742437expressed protein
LOC_Os02g10820Os.47337.1.S1_at11/112+5744792..5748139expressed protein
LOC_Os02g10820Os.55842.1.S1_at1/112+5744792..5748139expressed protein
LOC_Os02g10830NANA2+5748604..5749500satase isoform I, putative
LOC_Os02g10840Os.6191.2.S1_x_at11/112+5750577..5753676transposon protein, putative, unclassified, expressed
LOC_Os02g10840Os.6191.1.S1_at11/112+5750577..5753676transposon protein, putative, unclassified, expressed
LOC_Os02g10840Os.6191.2.S1_at11/112+5750577..5753676transposon protein, putative, unclassified, expressed
LOC_Os02g10850OsAffx.11982.1.S1_at11/112+5755371..5758098Kelch motif family protein, expressed
LOC_Os02g10860OsAffx.2569.1.S1_s_at11/112+5760633..5763645TGACG-motif binding factor, putative, expressed
LOC_Os02g10860Os.8561.1.S1_at11/112+5760633..5763645TGACG-motif binding factor, putative, expressed
LOC_Os02g10860OsAffx.2569.1.S1_at9/112+5760633..5763645TGACG-motif binding factor, putative, expressed
LOC_Os02g10870OsAffx.2570.1.S1_at11/112+5768300..5768731hypothetical protein
LOC_Os02g10880OsAffx.26224.2.S1_at1/112+5775949..5777385Indole-3-acetate beta-glucosyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6191.1.S1_at--720--6711Chr02:5751127..5751151 (25 bp)
GTTCGATGTTAAGATGTGCGCGTAT
LOC_Os02g10840
Os.6191.1.S1_at--698--2991Chr02:5750966..5750990 (25 bp)
AATGATACCGGTCAATCTTCTGGTT
LOC_Os02g10840
Os.6191.1.S1_at--811--431Chr02:5750952..5750976 (25 bp)
ATCTTCTGGTTTTTGCAATGGTGCA
LOC_Os02g10840
Os.6191.1.S1_at--602--8051Chr02:5750808..5750832 (25 bp)
GGAGAGGCACCTACAATCAACTGTT
LOC_Os02g10840
Os.6191.1.S1_at--382--2571Chr02:5750747..5750771 (25 bp)
AACTGTGTGAGGCACTACTCCAAAA
LOC_Os02g10840
Os.6191.1.S1_at--185--5251Chr02:5750703..5750727 (25 bp)
GAATCATGTTGGTCTCATCATAGAT
LOC_Os02g10840
Os.6191.1.S1_at--610--6131Chr02:5750677..5750701 (25 bp)
GAGGGCATCCAATTCTCTAGTTGCT
LOC_Os02g10840
Os.6191.1.S1_at--370--3771Chr02:5750663..5750687 (25 bp)
CTCTAGTTGCTGTAGTTCTCTTAAC
LOC_Os02g10840
Os.6191.1.S1_at--224--10371Chr02:5750638..5750662 (25 bp)
TTTTTCTCCTCTTTGTTCAGGGATG
LOC_Os02g10840
Os.6191.1.S1_at--752--3151Chr02:5750603..5750627 (25 bp)
AATTCTGGGCATATCATCAGCTCTC
LOC_Os02g10840
Os.6191.1.S1_at--1089--391Chr02:5750588..5750612 (25 bp)
ATCAGCTCTCCATCTACTTGGAGTT
LOC_Os02g10840
Target Sequence 
GTTCGATGTTAAGATGTGCGCGTATATCTCAAAAGATGCACTCAGTTGCTNTAAGATATTCGATGTCAGAAAAGGCGCTT
CAGTTTTTGGAAAGTGGGGTAGATAAGTTGACATGTGAAGTAGAAAATTTACTTAGTCACATAAACTTAAATGGAAATGG
AAATGATACCGGTCAATCTTCTGGTTTTTGCAATGGTGCAATGGCAGAAAGTTTAGGCCATTCAGAATCAATGTACAGCG
AAGGGGCCTAACCGCCTAACCTGCAAAAATACTAGAAAAAAGTGTTCTCAAGGAGGAAAATGGAAATGCNCTGCTAGAAG
GAGAGGCACCTACAATCAACTGTTATTTTCTGTTTATGTTAAATTCAAATCTCAGTTCTTAACTGTGTGAGGCACTACTC
CAAAAAGGAAAAAAAANTTCAAAGAGAATCATGTTGGTCTCATCATAGATAGAGGGCATCCAATTCTCTAGTTGCTGTAG
TTCTCTTAACTTTTTCTCCTCTTTGTTCAGGGATGAATCATACATAATTCTGGGCATATCATCAGCTCTCCATCTACTTG
GAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6191.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis