Browse Element(s) Details


OsAffx.2569.1.S1_at

Description tigr:9630.m01009
TID=OsAffx.2569.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=HY5
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g108609/11TGACG-motif binding factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10800Os.4975.1.S1_at11/112+5736608..5738792Brittle-1 protein, chloroplast precursor, putative, expressed
LOC_Os02g10810Os.9295.1.S1_at10/112+5740412..5742437expressed protein
LOC_Os02g10810Os.6721.1.S1_x_at1/112+5740412..5742437expressed protein
LOC_Os02g10820Os.47337.1.S1_at11/112+5744792..5748139expressed protein
LOC_Os02g10820Os.55842.1.S1_at1/112+5744792..5748139expressed protein
LOC_Os02g10830NANA2+5748604..5749500satase isoform I, putative
LOC_Os02g10840Os.6191.2.S1_x_at11/112+5750577..5753676transposon protein, putative, unclassified, expressed
LOC_Os02g10840Os.6191.1.S1_at11/112+5750577..5753676transposon protein, putative, unclassified, expressed
LOC_Os02g10840Os.6191.2.S1_at11/112+5750577..5753676transposon protein, putative, unclassified, expressed
LOC_Os02g10850OsAffx.11982.1.S1_at11/112+5755371..5758098Kelch motif family protein, expressed
LOC_Os02g10860OsAffx.2569.1.S1_s_at11/112+5760633..5763645TGACG-motif binding factor, putative, expressed
LOC_Os02g10860Os.8561.1.S1_at11/112+5760633..5763645TGACG-motif binding factor, putative, expressed
LOC_Os02g10860OsAffx.2569.1.S1_at9/112+5760633..5763645TGACG-motif binding factor, putative, expressed
LOC_Os02g10870OsAffx.2570.1.S1_at11/112+5768300..5768731hypothetical protein
LOC_Os02g10880OsAffx.26224.2.S1_at1/112+5775949..5777385Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os02g10890OsAffx.11983.1.S1_at11/112+5779673..5779987hypothetical protein
LOC_Os02g10900OsAffx.24191.1.S1_at11/112+5785295..5788769NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009640biological_processphotomorphogenesis
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2569.1.S1_at--817--10651Chr02:5762761..5762884 (25 bp)
TTCCTCTTTCGGGAATGGAGAGCGA
LOC_Os02g10860
OsAffx.2569.1.S1_at--554--3751Chr02:5762758..5762881 (25 bp)
CTCTTTCGGGAATGGAGAGCGACGA
LOC_Os02g10860
OsAffx.2569.1.S1_at--240--971Chr02:5762734..5762758 (25 bp)
AGGAGATAGGGAGAGTGCCGGAGCT
LOC_Os02g10860
OsAffx.2569.1.S1_at--67--1671Chr02:5762701..5762725 (25 bp)
AGCCGGGCGGCGCTTCGACGTCGGG
LOC_Os02g10860
OsAffx.2569.1.S1_at--35--4751Chr02:5762596..5762620 (25 bp)
GCAGCCCCGCGGATAAGGAGCACAA
LOC_Os02g10860
OsAffx.2569.1.S1_at--152--6471Chr02:5762585..5762609 (25 bp)
GATAAGGAGCACAAGCGCCTCAAAA
LOC_Os02g10860
OsAffx.2569.1.S1_at--89--5951Chr02:5762582..5762603 (22 bp)
GAGCACAAGCGCCTCAAAAGGTTGC
LOC_Os02g10860
OsAffx.2569.1.S1_at--103--3311NONE
CACAAGCGCCTCAAAAGGTTGCTGA
NONE
OsAffx.2569.1.S1_at--409--1651NONE
AGCGCCTCAAAAGGTTGCTGAGGAA
NONE
OsAffx.2569.1.S1_at--306--8891Chr02:5761196..5761220 (25 bp)
TGAGGAACCGGGTATCAGCGCAGCA
LOC_Os02g10860
OsAffx.2569.1.S1_at--8--5451Chr02:5761192..5761216 (25 bp)
GAACCGGGTATCAGCGCAGCAGGCA
LOC_Os02g10860
Target Sequence 
TTCCTCTTTCGGGAATGGAGAGCGACGAGGAGATAGGGAGAGTGCCGGAGCTGGGGCTGGAGCCGGGCGGCGCTTCGACG
TCGGGGAGGGCGGCCGGCGGCGGCGGCGGCGGGGCGGAGCGCGCGCAGTCGTCGACGGCGCAGGCCAGCGCGCGCCGCCG
CGGGCGCAGCCCCGCGGATAAGGAGCACAAGCGCCTCAAAAGGTTGCTGAGGAACCGGGTATCAGCGCAGCAGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2569.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis