Browse Element(s) Details


OsAffx.24191.1.S1_at

Description tigr:9630.m01013
TID=OsAffx.24191.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=apoptotic protease activating factor 1 (apaf-1). (rat)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1090011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10860OsAffx.2569.1.S1_s_at11/112+5760633..5763645TGACG-motif binding factor, putative, expressed
LOC_Os02g10860Os.8561.1.S1_at11/112+5760633..5763645TGACG-motif binding factor, putative, expressed
LOC_Os02g10860OsAffx.2569.1.S1_at9/112+5760633..5763645TGACG-motif binding factor, putative, expressed
LOC_Os02g10870OsAffx.2570.1.S1_at11/112+5768300..5768731hypothetical protein
LOC_Os02g10880OsAffx.26224.2.S1_at1/112+5775949..5777385Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os02g10890OsAffx.11983.1.S1_at11/112+5779673..5779987hypothetical protein
LOC_Os02g10900OsAffx.24191.1.S1_at11/112+5785295..5788769NB-ARC domain containing protein, expressed
LOC_Os02g10910Os.35344.3.S1_x_at9/112+5790143..5796042transposon protein, putative, Mutator sub-class
LOC_Os02g10910Os.35344.18.S1_x_at7/112+5790143..5796042transposon protein, putative, Mutator sub-class
LOC_Os02g10910OsAffx.22940.5.S1_x_at1/112+5790143..5796042transposon protein, putative, Mutator sub-class
LOC_Os02g10920Os.38796.1.S1_s_at11/112+5798921..5806395Zinc finger protein ZF2, putative, expressed
LOC_Os02g10920Os.10555.1.S1_a_at11/112+5798921..5806395Zinc finger protein ZF2, putative, expressed
LOC_Os02g10920Os.22458.1.S1_at1/112+5798921..5806395Zinc finger protein ZF2, putative, expressed
LOC_Os02g10930OsAffx.24192.1.S1_at11/112+5806604..5806954hypothetical protein
LOC_Os02g10940Os.52379.1.S1_s_at11/112+5812094..5813493TPR Domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24191.1.S1_at--391--2871Chr02:5785860..5785884 (25 bp)
AAGTGAGGTCTCACACTGCTTTTCT
LOC_Os02g10900
OsAffx.24191.1.S1_at--139--7351Chr02:5785745..5785769 (25 bp)
GTGCAACATCAACGATCTCCAGGAT
LOC_Os02g10900
OsAffx.24191.1.S1_at--785--6411Chr02:5785732..5785756 (25 bp)
GATCTCCAGGATTCAGCATACTATG
LOC_Os02g10900
OsAffx.24191.1.S1_at--192--4971Chr02:5785717..5785741 (25 bp)
GCATACTATGCCCTTCACCAGATTA
LOC_Os02g10900
OsAffx.24191.1.S1_at--1158--10691Chr02:5785621..5785645 (25 bp)
TTGCTTGACCGCAAGTCTTCAAAGA
LOC_Os02g10900
OsAffx.24191.1.S1_at--412--8171Chr02:5785592..5785616 (25 bp)
GGAACTAACAATGCAGCTTCTGGTA
LOC_Os02g10900
OsAffx.24191.1.S1_at--1077--7751Chr02:5785556..5785580 (25 bp)
GGTCGGAACCAAACCTTGCATCGAA
LOC_Os02g10900
OsAffx.24191.1.S1_at--287--5571Chr02:5785534..5785558 (25 bp)
GAAAGAATGCTCTCGTCCCAAATCA
LOC_Os02g10900
OsAffx.24191.1.S1_at--67--8631Chr02:5785478..5785502 (25 bp)
TGGGTCTTTCAGTGGAGCGGTATCA
LOC_Os02g10900
OsAffx.24191.1.S1_at--248--7351Chr02:5785430..5785454 (25 bp)
GTGCAAGAACGTCCAGTCTGCTGAG
LOC_Os02g10900
OsAffx.24191.1.S1_at--797--1151Chr02:5785336..5785360 (25 bp)
AGTCTAGTTGCCTCTGTGGAAGCTT
LOC_Os02g10900
Target Sequence 
AAGTGAGGTCTCACACTGCTTTTCTGGTGATGAAATTAGCCTGCACTGGAGGGGAACCATATGTCCATAGGTTCTTAGAG
GCTAACATTGTTCATGAGCTAATTGACATGATGCAGTGCAACATCAACGATCTCCAGGATTCAGCATACTATGCCCTTCA
CCAGATTATCTTTGCGAAGGGGGGATCACTTGTATTACAGAGATTTTTACAAGCAGGAACCATTGAAAAATTGGTTAACT
TGCTTGACCGCAAGTCTTCAAAGACAAAGGAACTAACAATGCAGCTTCTGGTAGACATTGCGGTGGTCGGAACCAAACCT
TGCATCGAAAGAATGCTCTCGTCCCAAATCATCGAGAAATTTGTGGCACTCGAGAAAGCAGGTGGGTCTTTCAGTGGAGC
GGTATCAAGATACGTGCAGGGGTTGAACATGTGCAAGAACGTCCAGTCTGCTGAGAGATCAGTCATGAAGCAACAGATTC
TGAGGAAAGTGAGATCAGAGATAAGAGGTCATGATCTGGAAGCAAGTCTAGTTGCCTCTGTGGAAGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24191.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis