Browse Element(s) Details


Os.22458.1.S1_at

Description gb:D43360
DB_XREF= gi:3107620
DB_XREF=D43360
CLONE=SS299
TID=Os.22458.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.22458 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g109201/11Zinc finger protein ZF2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10880OsAffx.26224.2.S1_at1/112+5775949..5777385Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os02g10890OsAffx.11983.1.S1_at11/112+5779673..5779987hypothetical protein
LOC_Os02g10900OsAffx.24191.1.S1_at11/112+5785295..5788769NB-ARC domain containing protein, expressed
LOC_Os02g10910Os.35344.3.S1_x_at9/112+5790143..5796042transposon protein, putative, Mutator sub-class
LOC_Os02g10910Os.35344.18.S1_x_at7/112+5790143..5796042transposon protein, putative, Mutator sub-class
LOC_Os02g10910OsAffx.22940.5.S1_x_at1/112+5790143..5796042transposon protein, putative, Mutator sub-class
LOC_Os02g10920Os.38796.1.S1_s_at11/112+5798921..5806395Zinc finger protein ZF2, putative, expressed
LOC_Os02g10920Os.10555.1.S1_a_at11/112+5798921..5806395Zinc finger protein ZF2, putative, expressed
LOC_Os02g10920Os.22458.1.S1_at1/112+5798921..5806395Zinc finger protein ZF2, putative, expressed
LOC_Os02g10930OsAffx.24192.1.S1_at11/112+5806604..5806954hypothetical protein
LOC_Os02g10940Os.52379.1.S1_s_at11/112+5812094..5813493TPR Domain containing protein, expressed
LOC_Os02g10950OsAffx.2571.1.S1_at11/112+5818597..5819181hypothetical protein
LOC_Os02g10960OsAffx.24194.1.S1_at11/112+5824528..5825141hypothetical protein
LOC_Os02g10970Os.6240.1.A1_at11/112+5826295..5834383peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22458.1.S1_at--1018--3531NONE
CATCCATTGAATCTCCAGGTTCCAT
NONE
Os.22458.1.S1_at--181--571NONE
ATCCATTGAATCTCCAGGTTCCATA
NONE
Os.22458.1.S1_at--623--5371NONE
GAAGAACAGAATCTATTGGCCAGTT
NONE
Os.22458.1.S1_at--1048--5491NONE
GAACAGAATCTATTGGCCAGTTGAA
NONE
Os.22458.1.S1_at--182--2151NONE
ACAGAATCTATTGGCCAGTTGAAAA
NONE
Os.22458.1.S1_at--712--10211NONE
TATTGGCCAGTTGAAAAATTGACCC
NONE
Os.22458.1.S1_at--829--8451NONE
TGGCCAGTTGAAAAATTGACCCCAA
NONE
Os.22458.1.S1_at--891--5511Chr02:5801765..5801788 (23 bp)
GAAAAAGGTCAGTCAATCTCAAAAG
LOC_Os02g10920
Os.22458.1.S1_at--476--7111NONE
GTCAGTCAATCTCAAAAGCCTACCT
NONE
Os.22458.1.S1_at--484--1151NONE
AGTCAATCTCAAAAGCCTACCTGTC
NONE
Os.22458.1.S1_at--910--7071NONE
GTCAATCTCAAAAGCCTACCTGTCT
NONE
Target Sequence 
CATCCATTGAATCTCCAGGTTCCATAAAGCAAAGAAGAACAGAATCTATTGGCCAGTTGAAAAATTGACCCCAAAAAAAA
CTTCGGAAGAAAAAGGTCAGTCAATCTCAAAAGCCTACCTGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22458.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis