Browse Element(s) Details


OsAffx.2571.1.S1_at

Description tigr:9630.m01020
TID=OsAffx.2571.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1095011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10910Os.35344.3.S1_x_at9/112+5790143..5796042transposon protein, putative, Mutator sub-class
LOC_Os02g10910Os.35344.18.S1_x_at7/112+5790143..5796042transposon protein, putative, Mutator sub-class
LOC_Os02g10910OsAffx.22940.5.S1_x_at1/112+5790143..5796042transposon protein, putative, Mutator sub-class
LOC_Os02g10920Os.38796.1.S1_s_at11/112+5798921..5806395Zinc finger protein ZF2, putative, expressed
LOC_Os02g10920Os.10555.1.S1_a_at11/112+5798921..5806395Zinc finger protein ZF2, putative, expressed
LOC_Os02g10920Os.22458.1.S1_at1/112+5798921..5806395Zinc finger protein ZF2, putative, expressed
LOC_Os02g10930OsAffx.24192.1.S1_at11/112+5806604..5806954hypothetical protein
LOC_Os02g10940Os.52379.1.S1_s_at11/112+5812094..5813493TPR Domain containing protein, expressed
LOC_Os02g10950OsAffx.2571.1.S1_at11/112+5818597..5819181hypothetical protein
LOC_Os02g10960OsAffx.24194.1.S1_at11/112+5824528..5825141hypothetical protein
LOC_Os02g10970Os.6240.1.A1_at11/112+5826295..5834383peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os02g10990OsAffx.2572.1.S1_at11/112+5835517..58386946-4 photolyase, putative, expressed
LOC_Os02g11000Os.34818.1.S2_at11/112+5841781..5847294Agenet domain containing protein, expressed
LOC_Os02g11000Os.34818.1.S1_x_at11/112+5841781..5847294Agenet domain containing protein, expressed
LOC_Os02g11000Os.34818.1.S1_at11/112+5841781..5847294Agenet domain containing protein, expressed
LOC_Os02g11000Os.8127.1.S1_at11/112+5841781..5847294Agenet domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2571.1.S1_at--146--4511Chr02:5819038..5819062 (25 bp)
GCCGATCGTCGTGCGCTGCAGAAAG
LOC_Os02g10950
OsAffx.2571.1.S1_at--1118--6391Chr02:5819035..5819059 (25 bp)
GATCGTCGTGCGCTGCAGAAAGCTC
LOC_Os02g10950
OsAffx.2571.1.S1_at--697--7291Chr02:5819028..5819052 (25 bp)
GTGCGCTGCAGAAAGCTCCTCGATG
LOC_Os02g10950
OsAffx.2571.1.S1_at--965--4751Chr02:5819024..5819048 (25 bp)
GCTGCAGAAAGCTCCTCGATGACAT
LOC_Os02g10950
OsAffx.2571.1.S1_at--805--3411Chr02:5819020..5819044 (25 bp)
CAGAAAGCTCCTCGATGACATCCGC
LOC_Os02g10950
OsAffx.2571.1.S1_at--599--8991Chr02:5818781..5818805 (25 bp)
TGAAGCGCGCGGAGATCAACCTGGA
LOC_Os02g10950
OsAffx.2571.1.S1_at--823--4571Chr02:5818775..5818799 (25 bp)
GCGCGGAGATCAACCTGGACTACTA
LOC_Os02g10950
OsAffx.2571.1.S1_at--342--8051Chr02:5818771..5818795 (25 bp)
GGAGATCAACCTGGACTACTACCGC
LOC_Os02g10950
OsAffx.2571.1.S1_at--833--1271Chr02:5818769..5818793 (25 bp)
AGATCAACCTGGACTACTACCGCCG
LOC_Os02g10950
OsAffx.2571.1.S1_at--466--9531Chr02:5818699..5818723 (25 bp)
TCTCAAGGAGGCCCTCTGCTTCGTC
LOC_Os02g10950
OsAffx.2571.1.S1_at--820--4051Chr02:5818650..5818674 (25 bp)
CGATGCTCGGCGAGTGCTCGAGGAA
LOC_Os02g10950
Target Sequence 
GCCGATCGTCGTGCGCTGCAGAAAGCTCCTCGATGACATCCGCCGCGCCGCGCCGCGTTCACACCACCGGTTCCAGGTCG
CCTCCGGGGCGCTCGCCGAGGCCGACCGCGCCATCGCCGCCGGCGCCTGGGGCGGCCTCCACAAACCGCTGCTGCTCGTC
GTCAGGGCGTTCGCGCTGGACGCCCCGGGGGCAGGGCCCGCCGGCGCGCTCCGGGCCCTTGCCGGCCGCCTCCCGCCGCG
GGAGCGCGGGGACGCGCTCGTGAAGCGCGCGGAGATCAACCTGGACTACTACCGCCGCTGCTTCTTCCCCTGCCCCGCCC
GCCTCGACCGCGCCGCCGCCGATCTCAAGGAGGCCCTCTGCTTCGTCCCCGACAACGCCCGCGCGCGCGCGCGATGCTCG
GCGAGTGCTCGAGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2571.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis