Browse Element(s) Details


Os.34818.1.S1_x_at

Description gb:AK070020.1
DB_XREF= gi:32980044
TID=Os.34818.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34818 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023038I16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023038I16, full insert sequence.
FL= gb:AK070020.1 gb:AK120670.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1100011/11Agenet domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10950OsAffx.2571.1.S1_at11/112+5818597..5819181hypothetical protein
LOC_Os02g10960OsAffx.24194.1.S1_at11/112+5824528..5825141hypothetical protein
LOC_Os02g10970Os.6240.1.A1_at11/112+5826295..5834383peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os02g10990OsAffx.2572.1.S1_at11/112+5835517..58386946-4 photolyase, putative, expressed
LOC_Os02g11000Os.34818.1.S2_at11/112+5841781..5847294Agenet domain containing protein, expressed
LOC_Os02g11000Os.34818.1.S1_x_at11/112+5841781..5847294Agenet domain containing protein, expressed
LOC_Os02g11000Os.34818.1.S1_at11/112+5841781..5847294Agenet domain containing protein, expressed
LOC_Os02g11000Os.8127.1.S1_at11/112+5841781..5847294Agenet domain containing protein, expressed
LOC_Os02g11010OsAffx.2573.1.S1_at7/112+5851856..5855893hypothetical protein
LOC_Os02g11010Os.48611.1.S1_at1/112+5851856..5855893hypothetical protein
LOC_Os02g11020OsAffx.24195.1.S1_at11/112+5863278..5865569cytochrome P450, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34818.1.S1_x_at--303--3771Chr02:5844148..5844172 (25 bp)
CTCTGTTGGTAGTTGCAATCCCTGC
LOC_Os02g11000
Os.34818.1.S1_x_at--312--6931Chr02:5844276..5844300 (25 bp)
GTAGGACTGATGATGCTGAAGCTTC
LOC_Os02g11000
Os.34818.1.S1_x_at--1044--5951Chr02:5844312..5844336 (25 bp)
GAGAATCACCTGCTCCTGTTAATGA
LOC_Os02g11000
Os.34818.1.S1_x_at--1015--2371Chr02:5844351..5844375 (25 bp)
AAACCCATTTGCTTGAGTTACATGC
LOC_Os02g11000
Os.34818.1.S1_x_at--387--8291Chr02:5844394..5844418 (25 bp)
GGCATTATATGCGTCTGGGTCAATT
LOC_Os02g11000
Os.34818.1.S1_x_at--670--6811Chr02:5844501..5844525 (25 bp)
GTTTGGTTTCCTCTGAAGTTCATTC
LOC_Os02g11000
Os.34818.1.S1_x_at--666--7171Chr02:5844551..5844575 (25 bp)
GTCTGTCTTGGTGGTTATGTAGGCA
LOC_Os02g11000
Os.34818.1.S1_x_at--3--3191Chr02:5844590..5844614 (25 bp)
CAATTGCAGAGTCATGGCCAGTGTT
LOC_Os02g11000
Os.34818.1.S1_x_at--205--8451Chr02:5844605..5844629 (25 bp)
GGCCAGTGTTGAAACCACATCCAGT
LOC_Os02g11000
Os.34818.1.S1_x_at--922--6491Chr02:5844674..5844698 (25 bp)
GATAGATTTACCATAACTTCTCAAA
LOC_Os02g11000
Os.34818.1.S1_x_at--711--9811Chr02:5844687..5844711 (25 bp)
TAACTTCTCAAATGCTACCTTTGCC
LOC_Os02g11000
Target Sequence 
CTCTGTTGGTAGTTGCAATCCCTGCGGTAGCCCCTATNGGATCAACACATCCTCAAGAGTATGATTGTGCAGATATTTGT
AGTAGGACTGATGATGCTGAAGTTTCTGTATCTGGAAGAGAATCGTTTAGTAGGACTGATGATGCTGAAGCTTCTGTATC
AGGAAGAGAATCACCTGCTCCTGTTAATGATGGTCTGAAAGAGAAAACCCATTTGCTTGAGTTACATGCTTATCGTGCAA
CACTGANTGGCATTATATGCGTCTGGGTCAATTAGCTGGGAGCAAGAGGCTATGATGACTAATCTGAGGCTTACATTGAA
CATCTCAACTGATGAACATTTATCTGAGTTAAGGAGTTTGGTTTCCTCTGAAGTTCATTCTAGATAGTCATATGAAACAG
TAGGTGTCTGTCTTGGTGGTTATGTAGGCATATCACTTATTTTACAATTGCAGAGTCATGGCCAGTGTTGAAACCACATC
CAGTTGGAGTACTTGATGTTCTGTATTAACCATGGAAACAGGTTGTATGATAGATTTACCATAACTTCTCAAATGCTACC
TTTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34818.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis