Browse Element(s) Details


OsAffx.2573.1.S1_at

Description tigr:9630.m01027
TID=OsAffx.2573.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g110107/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10970Os.6240.1.A1_at11/112+5826295..5834383peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os02g10990OsAffx.2572.1.S1_at11/112+5835517..58386946-4 photolyase, putative, expressed
LOC_Os02g11000Os.34818.1.S2_at11/112+5841781..5847294Agenet domain containing protein, expressed
LOC_Os02g11000Os.34818.1.S1_x_at11/112+5841781..5847294Agenet domain containing protein, expressed
LOC_Os02g11000Os.34818.1.S1_at11/112+5841781..5847294Agenet domain containing protein, expressed
LOC_Os02g11000Os.8127.1.S1_at11/112+5841781..5847294Agenet domain containing protein, expressed
LOC_Os02g11010OsAffx.2573.1.S1_at7/112+5851856..5855893hypothetical protein
LOC_Os02g11010Os.48611.1.S1_at1/112+5851856..5855893hypothetical protein
LOC_Os02g11020OsAffx.24195.1.S1_at11/112+5863278..5865569cytochrome P450, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2573.1.S1_at--616--9631Chr02:5855765..5855789 (25 bp)
TCATGGTTTCCAGCTCAGCTTGAGA
LOC_Os02g11010
OsAffx.2573.1.S1_at--875--9651NONE
TCAGCTTGAGAGACATCCGAGGTAA
NONE
OsAffx.2573.1.S1_at--229--5671NONE
GACATCCGAGGTAATATGTTTACAC
NONE
OsAffx.2573.1.S1_at--374--2231NONE
ACAAGTGTACCTAGTGAAATCTGCA
NONE
OsAffx.2573.1.S1_at--202--4311NONE
CCTAGTGAAATCTGCACTCTCTGCA
NONE
OsAffx.2573.1.S1_at--71--5051Chr02:5852291..5852315 (25 bp)
GCAGAAACAGCAGCAAGCTATCGAA
LOC_Os02g11010
OsAffx.2573.1.S1_at--349--1491Chr02:5852280..5852304 (25 bp)
AGCAAGCTATCGAATGGCCATGAGA
LOC_Os02g11010
OsAffx.2573.1.S1_at--599--1571Chr02:5852092..5852116 (25 bp)
AGCTAGCGGCTAGCGGCGCCATGAA
LOC_Os02g11010
OsAffx.2573.1.S1_at--464--8591Chr02:5851910..5851934 (25 bp)
TGGTCCCCGGCTTGGTCGTGTCCAT
LOC_Os02g11010
OsAffx.2573.1.S1_at--241--7451Chr02:5851893..5851917 (25 bp)
GTGTCCATGTCTGCCTAATTAACCA
LOC_Os02g11010
OsAffx.2573.1.S1_at--785--711Chr02:5851887..5851911 (25 bp)
ATGTCTGCCTAATTAACCACCCCGG
LOC_Os02g11010
Target Sequence 
TCATGGTTTCCAGCTCAGCTTGAGAGACATCCGAGGTAATATGTTTACACAAGTGTACCTAGTGAAATCTGCACTCTCTG
CAGATGCAGCAGAAACAGCAGCAAGCTATCGAATGGCCATGAGAGGACGAAGAGGTGAGAAAGAAGCACAGGTGCAGCTG
CAGCAGCTAGCGGCTAGCGGCGCCATGAATGATGAGATAGTGGCAGAGTGTGGCAGTGCATGCAGGCAGGCGGTGGGCGG
CGCAGGGGAGTCGCCTGGTCCCCGGCTTGGTCGTGTCCATGTCTGCCTAATTAACCACCCCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2573.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis