Browse Element(s) Details


OsAffx.2572.1.S1_at

Description tigr:9630.m01025
TID=OsAffx.2572.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AB003687 6-4 photolyase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1099011/116-4 photolyase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10940Os.52379.1.S1_s_at11/112+5812094..5813493TPR Domain containing protein, expressed
LOC_Os02g10950OsAffx.2571.1.S1_at11/112+5818597..5819181hypothetical protein
LOC_Os02g10960OsAffx.24194.1.S1_at11/112+5824528..5825141hypothetical protein
LOC_Os02g10970Os.6240.1.A1_at11/112+5826295..5834383peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os02g10990OsAffx.2572.1.S1_at11/112+5835517..58386946-4 photolyase, putative, expressed
LOC_Os02g11000Os.34818.1.S2_at11/112+5841781..5847294Agenet domain containing protein, expressed
LOC_Os02g11000Os.34818.1.S1_x_at11/112+5841781..5847294Agenet domain containing protein, expressed
LOC_Os02g11000Os.34818.1.S1_at11/112+5841781..5847294Agenet domain containing protein, expressed
LOC_Os02g11000Os.8127.1.S1_at11/112+5841781..5847294Agenet domain containing protein, expressed
LOC_Os02g11010OsAffx.2573.1.S1_at7/112+5851856..5855893hypothetical protein
LOC_Os02g11010Os.48611.1.S1_at1/112+5851856..5855893hypothetical protein
LOC_Os02g11020OsAffx.24195.1.S1_at11/112+5863278..5865569cytochrome P450, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0006290biological_processpyrimidine dimer repair
GO:0009411biological_processresponse to UV
GO:0009414biological_processresponse to water deprivation
GO:0009637biological_processresponse to blue light
GO:0009638biological_processphototropism
GO:0009640biological_processphotomorphogenesis
GO:0009785biological_processblue light signaling pathway
GO:0009826biological_processunidimensional cell growth
GO:0010118biological_processstomatal movement
GO:0046777biological_processprotein amino acid autophosphorylation
GO:0005634cellular_componentnucleus
GO:0003914molecular_functionDNA (6-4) photolyase activity
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0009882molecular_functionblue light photoreceptor activity
GO:0042803molecular_functionprotein homodimerization activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2572.1.S1_at--1014--6351Chr02:5837420..5837584 (25 bp)
GATGCCATCATGATTCAGCTGAGGA
LOC_Os02g10990
OsAffx.2572.1.S1_at--1155--7751Chr02:5837641..5837927 (25 bp)
GGTGATCTGTTTATCCACTGGGAGA
LOC_Os02g10990
OsAffx.2572.1.S1_at--741--3531Chr02:5838009..5838134 (25 bp)
CATCCTTCTTTTACCAGTATCACAG
LOC_Os02g10990
OsAffx.2572.1.S1_at--766--2531Chr02:5838181..5838205 (25 bp)
AACTACATCAGGCATTTCATCCCGG
LOC_Os02g10990
OsAffx.2572.1.S1_at--328--551Chr02:5838199..5838301 (25 bp)
ATCCCGGTGCTGAAAGACATGCCCA
LOC_Os02g10990
OsAffx.2572.1.S1_at--584--8031Chr02:5838303..5838327 (25 bp)
GGAGTACATCTATGAACCTTGGACT
LOC_Os02g10990
OsAffx.2572.1.S1_at--661--5091Chr02:5838328..5838352 (25 bp)
GCACCCCTCAGCATTCAGAAGAAAG
LOC_Os02g10990
OsAffx.2572.1.S1_at--392--2371Chr02:5838503..5838524 (22 bp)
AAACCAGTGGTTGATCATGCGATTG
LOC_Os02g10990
OsAffx.2572.1.S1_at--1023--7611Chr02:5838550..5838574 (25 bp)
GGGAGAAGCTTATGCGTCTAACCGC
LOC_Os02g10990
OsAffx.2572.1.S1_at--896--7151Chr02:5838565..5838589 (25 bp)
GTCTAACCGCCTCGATGACGATAAG
LOC_Os02g10990
OsAffx.2572.1.S1_at--29--5571Chr02:5838624..5838648 (25 bp)
GAAAGCTGTCTGCTGGCAGCCAAGT
LOC_Os02g10990
Target Sequence 
GATGCCATCATGATTCAGCTGAGGAAGTGGGGTTGGATGCATCATCTTGCACGCCACTCTGTTGCTTGTTTTCTAACACG
GGGTGATCTGTTTATCCACTGGGAGAAAGGTCGTGATGTCTTTGAAAGGCTACTGATAGATTCTGACTGGGCTATTAACA
ATGGCAACTGGATGTGGCTCTCCTGTTCATCCTTCTTTTACCAGTATCACAGAATTTATTCCCCAACCTCTTTCGGAAAG
AAGTATGATCCTAACGGAAACTACATCAGGCATTTCATCCCGGTGCTGAAAGACATGCCCAAGGAGTACATCTATGAACC
TTGGACTGCACCCCTCAGCATTCAGAAGAAAGCAAACTGCATAATTGGCAAAGACTACCCAAAACCAGTGGTTGATCATG
CGATTGCAAGCAAAGAATGCAAGAAGATGATGGGAGAAGCTTATGCGTCTAACCGCCTCGATGACGATAAGCCTGACAAA
GGGAAATCCTCCAATTCTTCGCGAAGAAAGCTGTCTGCTGGCAGCCAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2572.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis