Browse Element(s) Details


OsAffx.24194.1.S1_at

Description tigr:9630.m01021
TID=OsAffx.24194.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1096011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10920Os.38796.1.S1_s_at11/112+5798921..5806395Zinc finger protein ZF2, putative, expressed
LOC_Os02g10920Os.10555.1.S1_a_at11/112+5798921..5806395Zinc finger protein ZF2, putative, expressed
LOC_Os02g10920Os.22458.1.S1_at1/112+5798921..5806395Zinc finger protein ZF2, putative, expressed
LOC_Os02g10930OsAffx.24192.1.S1_at11/112+5806604..5806954hypothetical protein
LOC_Os02g10940Os.52379.1.S1_s_at11/112+5812094..5813493TPR Domain containing protein, expressed
LOC_Os02g10950OsAffx.2571.1.S1_at11/112+5818597..5819181hypothetical protein
LOC_Os02g10960OsAffx.24194.1.S1_at11/112+5824528..5825141hypothetical protein
LOC_Os02g10970Os.6240.1.A1_at11/112+5826295..5834383peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os02g10990OsAffx.2572.1.S1_at11/112+5835517..58386946-4 photolyase, putative, expressed
LOC_Os02g11000Os.34818.1.S2_at11/112+5841781..5847294Agenet domain containing protein, expressed
LOC_Os02g11000Os.34818.1.S1_x_at11/112+5841781..5847294Agenet domain containing protein, expressed
LOC_Os02g11000Os.34818.1.S1_at11/112+5841781..5847294Agenet domain containing protein, expressed
LOC_Os02g11000Os.8127.1.S1_at11/112+5841781..5847294Agenet domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24194.1.S1_at--787--1071Chr02:5825086..5825110 (25 bp)
AGGGAGCCTGGGTGTGCCACTTCCT
LOC_Os02g10960
OsAffx.24194.1.S1_at--1080--3311Chr02:5825069..5825093 (25 bp)
CACTTCCTCGCGGAGATTGTGGAGC
LOC_Os02g10960
OsAffx.24194.1.S1_at--1086--10831Chr02:5825053..5825077 (25 bp)
TTGTGGAGCTCATGGCCTTCATCTT
LOC_Os02g10960
OsAffx.24194.1.S1_at--388--951Chr02:5824966..5824990 (25 bp)
AGGACGCCCACGATTACTTCGTCGA
LOC_Os02g10960
OsAffx.24194.1.S1_at--877--4511Chr02:5824961..5824985 (25 bp)
GCCCACGATTACTTCGTCGAGGAAG
LOC_Os02g10960
OsAffx.24194.1.S1_at--521--3351Chr02:5824958..5824982 (25 bp)
CACGATTACTTCGTCGAGGAAGGCA
LOC_Os02g10960
OsAffx.24194.1.S1_at--916--2891Chr02:5824942..5824963 (22 bp)
AAGGCAGGAAGCACCTCGCCGGGCC
LOC_Os02g10960
OsAffx.24194.1.S1_at--529--7571Chr02:5824781..5824805 (25 bp)
GGGCGCTCCACTTGCTGGGCGAGCG
LOC_Os02g10960
OsAffx.24194.1.S1_at--297--1671Chr02:5824726..5824750 (25 bp)
AGCCCTCAGCACAGGCTACGGCTAC
LOC_Os02g10960
OsAffx.24194.1.S1_at--713--4231Chr02:5824646..5824670 (25 bp)
CCGAGATCGAGCTCGTGCGCTATCT
LOC_Os02g10960
OsAffx.24194.1.S1_at--443--5911Chr02:5824638..5824662 (25 bp)
GAGCTCGTGCGCTATCTCCGCTGCA
LOC_Os02g10960
Target Sequence 
AGGGAGCCTGGGTGTGCCACTTCCTCGCGGAGATTGTGGAGCTCATGGCCTTCATCTTCTCTCTTCCTTTCCGCCTCCTC
GCCGAAATCCTCTCCGGCGGCGGCGGCGACGGCGACCTGCAGGACGCCCACGATTACTTCGTCGAGGAAGGCAGGAAGCA
CCTCGCCGGGCCTGGGGCGCTCCACTTGCTGGGCGAGCGCCGCCGCGACGCGCTGAGCGCCCTCGACGCAGCCCTCAGCA
CAGGCTACGGCTACGGCTACCACGACCTCCTTCCGCTGGAGGAGCGCGCCGACGCGCTCGTGGCGCGCGCCGAGATCGAG
CTCGTGCGCTATCTCCGCTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24194.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis