Browse Element(s) Details


OsAffx.24192.1.S1_at

Description tigr:9630.m01018
TID=OsAffx.24192.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1093011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10900OsAffx.24191.1.S1_at11/112+5785295..5788769NB-ARC domain containing protein, expressed
LOC_Os02g10910Os.35344.3.S1_x_at9/112+5790143..5796042transposon protein, putative, Mutator sub-class
LOC_Os02g10910Os.35344.18.S1_x_at7/112+5790143..5796042transposon protein, putative, Mutator sub-class
LOC_Os02g10910OsAffx.22940.5.S1_x_at1/112+5790143..5796042transposon protein, putative, Mutator sub-class
LOC_Os02g10920Os.38796.1.S1_s_at11/112+5798921..5806395Zinc finger protein ZF2, putative, expressed
LOC_Os02g10920Os.10555.1.S1_a_at11/112+5798921..5806395Zinc finger protein ZF2, putative, expressed
LOC_Os02g10920Os.22458.1.S1_at1/112+5798921..5806395Zinc finger protein ZF2, putative, expressed
LOC_Os02g10930OsAffx.24192.1.S1_at11/112+5806604..5806954hypothetical protein
LOC_Os02g10940Os.52379.1.S1_s_at11/112+5812094..5813493TPR Domain containing protein, expressed
LOC_Os02g10950OsAffx.2571.1.S1_at11/112+5818597..5819181hypothetical protein
LOC_Os02g10960OsAffx.24194.1.S1_at11/112+5824528..5825141hypothetical protein
LOC_Os02g10970Os.6240.1.A1_at11/112+5826295..5834383peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24192.1.S1_at--286--4011Chr02:5806656..5806680 (25 bp)
CGTGCCAGGGCAAGTGTGTCACTGA
LOC_Os02g10930
OsAffx.24192.1.S1_at--238--7171Chr02:5806689..5806713 (25 bp)
GTCTCGTTGTGGTCCCCTCATGGAT
LOC_Os02g10930
OsAffx.24192.1.S1_at--360--4291Chr02:5806704..5806728 (25 bp)
CCTCATGGATGGCTCGTATAGTCGG
LOC_Os02g10930
OsAffx.24192.1.S1_at--229--9851Chr02:5806734..5806758 (25 bp)
TACACGTGTTTTGGGCGAGGAGAAA
LOC_Os02g10930
OsAffx.24192.1.S1_at--753--2371Chr02:5806756..5806780 (25 bp)
AAACCGGGCGTGTCACGTCGTGATC
LOC_Os02g10930
OsAffx.24192.1.S1_at--467--8851Chr02:5806776..5806800 (25 bp)
TGATCTGGACCGTCCGTCGGGTGAT
LOC_Os02g10930
OsAffx.24192.1.S1_at--620--9271Chr02:5806788..5806812 (25 bp)
TCCGTCGGGTGATTGACGTTGGCCC
LOC_Os02g10930
OsAffx.24192.1.S1_at--188--7111Chr02:5806815..5806839 (25 bp)
GTCTTTGGCTGATACGCGACGAAAA
LOC_Os02g10930
OsAffx.24192.1.S1_at--1080--1271Chr02:5806845..5806869 (25 bp)
AGATCATAATCCTCGTGCTTGTTTG
LOC_Os02g10930
OsAffx.24192.1.S1_at--129--9771Chr02:5806851..5806875 (25 bp)
TAATCCTCGTGCTTGTTTGGGTCGC
LOC_Os02g10930
OsAffx.24192.1.S1_at--172--8771Chr02:5806864..5806888 (25 bp)
TGTTTGGGTCGCTGTCGATGCTGCT
LOC_Os02g10930
Target Sequence 
CGTGCCAGGGCAAGTGTGTCACTGACAGGTGGGGTCTCGTTGTGGTCCCCTCATGGATGGCTCGTATAGTCGGGGTAGTA
CACGTGTTTTGGGCGAGGAGAAACCGGGCGTGTCACGTCGTGATCTGGACCGTCCGTCGGGTGATTGACGTTGGCCCCCG
TCTTTGGCTGATACGCGACGAAAAATATCAGATCATAATCCTCGTGCTTGTTTGGGTCGCTGTCGATGCTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24192.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis