Browse Element(s) Details


Os.52379.1.S1_s_at

Description gb:AK066727.1
DB_XREF= gi:32976745
TID=Os.52379.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52379 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013075K01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013075K01, full insert sequence.
FL= gb:AK066727.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1094011/11TPR Domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10900OsAffx.24191.1.S1_at11/112+5785295..5788769NB-ARC domain containing protein, expressed
LOC_Os02g10910Os.35344.3.S1_x_at9/112+5790143..5796042transposon protein, putative, Mutator sub-class
LOC_Os02g10910Os.35344.18.S1_x_at7/112+5790143..5796042transposon protein, putative, Mutator sub-class
LOC_Os02g10910OsAffx.22940.5.S1_x_at1/112+5790143..5796042transposon protein, putative, Mutator sub-class
LOC_Os02g10920Os.38796.1.S1_s_at11/112+5798921..5806395Zinc finger protein ZF2, putative, expressed
LOC_Os02g10920Os.10555.1.S1_a_at11/112+5798921..5806395Zinc finger protein ZF2, putative, expressed
LOC_Os02g10920Os.22458.1.S1_at1/112+5798921..5806395Zinc finger protein ZF2, putative, expressed
LOC_Os02g10930OsAffx.24192.1.S1_at11/112+5806604..5806954hypothetical protein
LOC_Os02g10940Os.52379.1.S1_s_at11/112+5812094..5813493TPR Domain containing protein, expressed
LOC_Os02g10950OsAffx.2571.1.S1_at11/112+5818597..5819181hypothetical protein
LOC_Os02g10960OsAffx.24194.1.S1_at11/112+5824528..5825141hypothetical protein
LOC_Os02g10970Os.6240.1.A1_at11/112+5826295..5834383peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os02g10990OsAffx.2572.1.S1_at11/112+5835517..58386946-4 photolyase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52379.1.S1_s_at--486--7371Chr02:5812388..5812743 (25 bp)
GTGACAGTGACTGATGAACTTGCTG
LOC_Os02g10940
Os.52379.1.S1_s_at--767--5471Chr02:5812373..5812397 (25 bp)
GAACTTGCTGATGGGTGAACATTTC
LOC_Os02g10940
Os.52379.1.S1_s_at--710--7711Chr02:5812361..5812385 (25 bp)
GGGTGAACATTTCTAACTCTTGTTG
LOC_Os02g10940
Os.52379.1.S1_s_at--553--2011Chr02:5812346..5812370 (25 bp)
ACTCTTGTTGTGTATCTCGGGTGGA
LOC_Os02g10940
Os.52379.1.S1_s_at--138--10251Chr02:5812268..5812292 (25 bp)
TTTGTGGTTGGTTACCTTCAAACAT
LOC_Os02g10940
Os.52379.1.S1_s_at--140--9711Chr02:5812251..5812275 (25 bp)
TCAAACATTGTTACTTACCTCGCTC
LOC_Os02g10940
Os.52379.1.S1_s_at--833--9891Chr02:5812240..5812264 (25 bp)
TACTTACCTCGCTCCATTGTTGTAT
LOC_Os02g10940
Os.52379.1.S1_s_at--384--11Chr02:5812182..5812206 (25 bp)
ATACCCAGTTTACATACTATTCAGG
LOC_Os02g10940
Os.52379.1.S1_s_at--225--311Chr02:5812169..5812193 (25 bp)
ATACTATTCAGGTGATGGTATGCCT
LOC_Os02g10940
Os.52379.1.S1_s_at--381--791Chr02:5812155..5812179 (25 bp)
ATGGTATGCCTGTGGATTTAGTTCA
LOC_Os02g10940
Os.52379.1.S1_s_at--940--251Chr02:5812129..5812153 (25 bp)
ATATGCTATATCTGTATCTTTTGGA
LOC_Os02g10940
Target Sequence 
GTGACAGTGACTGATGAACTTGCTGATGGGTGAACATTTCTAACTCTTGTTGTGTATCTCGGGTGGAATGAACAACCGTC
TTGATGGCAACAATGGTAAATGTGTAATATTATAAGGTTTTTTGTGGTTGGTTACCTTCAAACATTGTTACTTACCTCGC
TCCATTGTTGTATATTAGTGGATATGCGGATTTAGTAGAATGGAAAATACCCAGTTTACATACTATTCAGGTGATGGTAT
GCCTGTGGATTTAGTTCAGATATGCTATATCTGTATCTTTTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52379.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis