Browse Element(s) Details


Os.6240.1.A1_at

Description gb:AK068982.1
DB_XREF= gi:32979006
TID=Os.6240.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.6240 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023002I11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023002I11, full insert sequence.
FL= gb:AK068982.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1097011/11peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10920Os.38796.1.S1_s_at11/112+5798921..5806395Zinc finger protein ZF2, putative, expressed
LOC_Os02g10920Os.10555.1.S1_a_at11/112+5798921..5806395Zinc finger protein ZF2, putative, expressed
LOC_Os02g10920Os.22458.1.S1_at1/112+5798921..5806395Zinc finger protein ZF2, putative, expressed
LOC_Os02g10930OsAffx.24192.1.S1_at11/112+5806604..5806954hypothetical protein
LOC_Os02g10940Os.52379.1.S1_s_at11/112+5812094..5813493TPR Domain containing protein, expressed
LOC_Os02g10950OsAffx.2571.1.S1_at11/112+5818597..5819181hypothetical protein
LOC_Os02g10960OsAffx.24194.1.S1_at11/112+5824528..5825141hypothetical protein
LOC_Os02g10970Os.6240.1.A1_at11/112+5826295..5834383peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os02g10990OsAffx.2572.1.S1_at11/112+5835517..58386946-4 photolyase, putative, expressed
LOC_Os02g11000Os.34818.1.S2_at11/112+5841781..5847294Agenet domain containing protein, expressed
LOC_Os02g11000Os.34818.1.S1_x_at11/112+5841781..5847294Agenet domain containing protein, expressed
LOC_Os02g11000Os.34818.1.S1_at11/112+5841781..5847294Agenet domain containing protein, expressed
LOC_Os02g11000Os.8127.1.S1_at11/112+5841781..5847294Agenet domain containing protein, expressed
LOC_Os02g11010OsAffx.2573.1.S1_at7/112+5851856..5855893hypothetical protein
LOC_Os02g11010Os.48611.1.S1_at1/112+5851856..5855893hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0007165biological_processsignal transduction
GO:0010050biological_processvegetative phase change
GO:0005829cellular_componentcytosol
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
GO:0016018molecular_functioncyclosporin A binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6240.1.A1_at--810--4131Chr02:5833794..5833818 (25 bp)
CGCTCTCCTGCTGGTGGGAAACTAA
LOC_Os02g10970
Os.6240.1.A1_at--873--2531Chr02:5833813..5833837 (25 bp)
AACTAAGGTCGCATGGTGATCGCTC
LOC_Os02g10970
Os.6240.1.A1_at--345--1511Chr02:5833854..5833878 (25 bp)
AGCAGGAGCCTGTCTGGGTCAAGAT
LOC_Os02g10970
Os.6240.1.A1_at--1006--7691Chr02:5833869..5833893 (25 bp)
GGGTCAAGATCAAGGTCTCCACCAC
LOC_Os02g10970
Os.6240.1.A1_at--717--10651Chr02:5833919..5833943 (25 bp)
TTCCCTGTCCCCAAAGCGAGAGAGT
LOC_Os02g10970
Os.6240.1.A1_at--567--1331Chr02:5833939..5833963 (25 bp)
AGAGTAATGCAAAGTCCCGGTCACC
LOC_Os02g10970
Os.6240.1.A1_at--664--6831Chr02:5833995..5834019 (25 bp)
GTTTCGTATGGAGATGGTTCCCCTG
LOC_Os02g10970
Os.6240.1.A1_at--995--611Chr02:5834047..5834071 (25 bp)
ATGCATGTACAAGCTTTGGCCGTTG
LOC_Os02g10970
Os.6240.1.A1_at--232--10232Chr10:14122229..14122254 (23 bp)
TATTGGGAAGCTTTGGCCGTTGCTC
NONE
Os.6240.1.A1_at--555--5051Chr02:5834182..5834206 (25 bp)
GCAGAAGCTGTTTTTGTCATCTTAG
LOC_Os02g10970
Os.6240.1.A1_at--244--4731Chr02:5834313..5834337 (25 bp)
GCTGTAATTCTTGTGCGCCGTGGCA
LOC_Os02g10970
Target Sequence 
CGCTCTCCTGCTGGTGGGAAACTAAGGTCGCATGGTGATCGCTCGCGTTCAATGTCAAGGAGCAGGAGCCTGTCTGGGTC
AAGATCAAGGTCTCCACCACCAATACACAATCGCTCCCCACTTGCTTCCCTGTCCCCAAAGCGAGAGAGTAATGCAAAGT
CCCGGTCACCCTCTGCCAGTTNTGAAGGGAAGAAAGGTTTGGTTTCGTATGGAGATGGTTCCCCTGATTCTGCTGGGAAG
TAGGAATCCATGAATGCATGTACAAGCTTTGGCCGTTGCTCAACCCATCTGCATTGCAGTATTGGGAAGCTTTGGCCGTT
GCTCAACCCATCTGCATTGCAGTATTGGGTTTGAAATGCTACGGTTANAGAAGCTATTTTGAGGTGCTGCAGAAGCTGTT
TTTGTCATCTTAGAGATGTTATATATTTATGGATGGTTGTGAGTTGGTTGAATCTTGTCTAGACGATCATAAGCCGAGGT
TAGCTAATGGTTTNTTAAACTTGCAACACAGTTTTTCTGGCTGTAATTCTTGTGCGCCGTGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6240.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis