Browse Element(s) Details


Os.8127.1.S1_at

Description gb:AK068229.1
DB_XREF= gi:32978247
TID=Os.8127.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8127 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013149J03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013149J03, full insert sequence.
FL= gb:AK068229.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1100011/11Agenet domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10950OsAffx.2571.1.S1_at11/112+5818597..5819181hypothetical protein
LOC_Os02g10960OsAffx.24194.1.S1_at11/112+5824528..5825141hypothetical protein
LOC_Os02g10970Os.6240.1.A1_at11/112+5826295..5834383peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os02g10990OsAffx.2572.1.S1_at11/112+5835517..58386946-4 photolyase, putative, expressed
LOC_Os02g11000Os.34818.1.S2_at11/112+5841781..5847294Agenet domain containing protein, expressed
LOC_Os02g11000Os.34818.1.S1_x_at11/112+5841781..5847294Agenet domain containing protein, expressed
LOC_Os02g11000Os.34818.1.S1_at11/112+5841781..5847294Agenet domain containing protein, expressed
LOC_Os02g11000Os.8127.1.S1_at11/112+5841781..5847294Agenet domain containing protein, expressed
LOC_Os02g11010OsAffx.2573.1.S1_at7/112+5851856..5855893hypothetical protein
LOC_Os02g11010Os.48611.1.S1_at1/112+5851856..5855893hypothetical protein
LOC_Os02g11020OsAffx.24195.1.S1_at11/112+5863278..5865569cytochrome P450, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8127.1.S1_at--98--491Chr02:5846736..5846760 (25 bp)
ATCTGGTTCATTGTTCTGTTTCTTC
LOC_Os02g11000
Os.8127.1.S1_at--211--10611Chr02:5846749..5846773 (25 bp)
TTCTGTTTCTTCTTTTGTCTTAAAG
LOC_Os02g11000
Os.8127.1.S1_at--532--1211Chr02:5846810..5846834 (25 bp)
AGTTTTCTTCCTGTGCATATCGTGG
LOC_Os02g11000
Os.8127.1.S1_at--603--3891Chr02:5846820..5846844 (25 bp)
CTGTGCATATCGTGGCGCTTTAGAT
LOC_Os02g11000
Os.8127.1.S1_at--686--8371Chr02:5846833..5846857 (25 bp)
GGCGCTTTAGATCACTGGTATTCTC
LOC_Os02g11000
Os.8127.1.S1_at--377--8511Chr02:5846899..5846923 (25 bp)
TGGACCATTCAATACACCTAGCCTA
LOC_Os02g11000
Os.8127.1.S1_at--918--1731Chr02:5846914..5846938 (25 bp)
ACCTAGCCTATGTGTCAACTGGAAC
LOC_Os02g11000
Os.8127.1.S1_at--714--8051Chr02:5847073..5847097 (25 bp)
GGAGATGCAGCAACGTGTGTAAAAT
LOC_Os02g11000
Os.8127.1.S1_at--712--6171Chr02:5847109..5847133 (25 bp)
GAGGAGGATCACTGTGGTGCACAAA
LOC_Os02g11000
Os.8127.1.S1_at--893--331Chr02:5847244..5847268 (25 bp)
ATACATGACTTGTTTCTGAAGCAGT
LOC_Os02g11000
Os.8127.1.S1_at--1102--6911Chr02:5847267..5847291 (25 bp)
GTATGGAATATAATCCTCTTTTTCA
LOC_Os02g11000
Target Sequence 
ATCTGGTTCATTGTTCTGTTTCTTCTTTTGTCTTAAAGAAATTTTATATCATGTCCTGTATAGTGATAACATTCAGTTTT
CTTCCTGTGCATATCGTGGCGCTTTAGATCACTGGTATTCTCTGAGAATATCACAATAATGATTCTACATATGAAATGAA
TATTGGACCATTCAATACACCTAGCCTATGTGTCAACTGGAACATTTTTTTTCTATCTTTACAAATGCAAGAACATGTAA
TGGGATGGATTTTTTTTTTGTCACATATAAAGTAGTCACATACAAAGGTTGGCAAATAACAAGCTACCAAAGCAGCAACN
TGGGAAAATATAACTGAGGAGATGCAGCAACGTGTGTAAAATATAATGGAGGAGAGGAGGATCACTGTGGTGCACAAAAG
CTTTTTTTTTTTTTGTTGTTGTTGTGAAAACTAATTACAACTTTTTATAGCATGTATGTATGTACACAATAAGAGGGTGA
AATGTAAAGCATTAACTGAACAGCTGATGTATACATGACTTGTTTCTGAAGCAGTATGGAATATAATCCTCTTTTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8127.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis