Browse Element(s) Details


OsAffx.11983.1.S1_at

Description tigr:9630.m01012
TID=OsAffx.11983.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1089011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10850OsAffx.11982.1.S1_at11/112+5755371..5758098Kelch motif family protein, expressed
LOC_Os02g10860OsAffx.2569.1.S1_s_at11/112+5760633..5763645TGACG-motif binding factor, putative, expressed
LOC_Os02g10860Os.8561.1.S1_at11/112+5760633..5763645TGACG-motif binding factor, putative, expressed
LOC_Os02g10860OsAffx.2569.1.S1_at9/112+5760633..5763645TGACG-motif binding factor, putative, expressed
LOC_Os02g10870OsAffx.2570.1.S1_at11/112+5768300..5768731hypothetical protein
LOC_Os02g10880OsAffx.26224.2.S1_at1/112+5775949..5777385Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os02g10890OsAffx.11983.1.S1_at11/112+5779673..5779987hypothetical protein
LOC_Os02g10900OsAffx.24191.1.S1_at11/112+5785295..5788769NB-ARC domain containing protein, expressed
LOC_Os02g10910Os.35344.3.S1_x_at9/112+5790143..5796042transposon protein, putative, Mutator sub-class
LOC_Os02g10910Os.35344.18.S1_x_at7/112+5790143..5796042transposon protein, putative, Mutator sub-class
LOC_Os02g10910OsAffx.22940.5.S1_x_at1/112+5790143..5796042transposon protein, putative, Mutator sub-class
LOC_Os02g10920Os.38796.1.S1_s_at11/112+5798921..5806395Zinc finger protein ZF2, putative, expressed
LOC_Os02g10920Os.10555.1.S1_a_at11/112+5798921..5806395Zinc finger protein ZF2, putative, expressed
LOC_Os02g10920Os.22458.1.S1_at1/112+5798921..5806395Zinc finger protein ZF2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11983.1.S1_at--280--6411Chr02:5779704..5779728 (25 bp)
GATCTGGTAGTAACAGGGCATGTCT
LOC_Os02g10890
OsAffx.11983.1.S1_at--399--1171Chr02:5779712..5779736 (25 bp)
AGTAACAGGGCATGTCTGTGGCAGT
LOC_Os02g10890
OsAffx.11983.1.S1_at--87--7731Chr02:5779796..5779820 (25 bp)
GGGTGGCTGCCCTGTCCAGATTCAA
LOC_Os02g10890
OsAffx.11983.1.S1_at--282--8491Chr02:5779799..5779823 (25 bp)
TGGCTGCCCTGTCCAGATTCAAGGG
LOC_Os02g10890
OsAffx.11983.1.S1_at--345--8031Chr02:5779847..5779871 (25 bp)
GGAGGGCAGCGACATCTAGATCTAA
LOC_Os02g10890
OsAffx.11983.1.S1_at--566--8251Chr02:5779851..5779875 (25 bp)
GGCAGCGACATCTAGATCTAATGGG
LOC_Os02g10890
OsAffx.11983.1.S1_at--840--6351Chr02:5779865..5779889 (25 bp)
GATCTAATGGGGCTCGTCGTCTTCG
LOC_Os02g10890
OsAffx.11983.1.S1_at--179--7211Chr02:5779880..5779904 (25 bp)
GTCGTCTTCGGCTCTTCAGATCCGG
LOC_Os02g10890
OsAffx.11983.1.S1_at--26--7151Chr02:5779883..5779907 (25 bp)
GTCTTCGGCTCTTCAGATCCGGCCA
LOC_Os02g10890
OsAffx.11983.1.S1_at--152--8451Chr02:5779903..5779927 (25 bp)
GGCCACCTCGGCAGAGCAACAATGC
LOC_Os02g10890
OsAffx.11983.1.S1_at--176--2311Chr02:5779932..5779956 (25 bp)
AAAGGCGGTGCAGCAATGGAGACGA
LOC_Os02g10890
Target Sequence 
GATCTGGTAGTAACAGGGCATGTCTGTGGCAGTGGCGAAGGGATGCAGCAGTGGGGCTAGGAGGGCTCGCCGACGGCAAC
GGTGCGGGGAGAGGGTGGCTGCCCTGTCCAGATTCAAGGGGTGGCACGTCGGCAGTAGTGGGGGGAGGGCAGCGACATCT
AGATCTAATGGGGCTCGTCGTCTTCGGCTCTTCAGATCCGGCCACCTCGGCAGAGCAACAATGCCGGCAAAGGCGGTGCA
GCAATGGAGACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11983.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis