Browse Element(s) Details


OsAffx.11982.1.S1_at

Description tigr:9630.m01008
TID=OsAffx.11982.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1085011/11Kelch motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10790Os.53264.1.S1_x_at11/112+5709733..5732172expressed protein
LOC_Os02g10790OsAffx.11980.1.S1_at9/112+5709733..5732172expressed protein
LOC_Os02g10800Os.4975.1.S1_at11/112+5736608..5738792Brittle-1 protein, chloroplast precursor, putative, expressed
LOC_Os02g10810Os.9295.1.S1_at10/112+5740412..5742437expressed protein
LOC_Os02g10810Os.6721.1.S1_x_at1/112+5740412..5742437expressed protein
LOC_Os02g10820Os.47337.1.S1_at11/112+5744792..5748139expressed protein
LOC_Os02g10820Os.55842.1.S1_at1/112+5744792..5748139expressed protein
LOC_Os02g10830NANA2+5748604..5749500satase isoform I, putative
LOC_Os02g10840Os.6191.2.S1_x_at11/112+5750577..5753676transposon protein, putative, unclassified, expressed
LOC_Os02g10840Os.6191.1.S1_at11/112+5750577..5753676transposon protein, putative, unclassified, expressed
LOC_Os02g10840Os.6191.2.S1_at11/112+5750577..5753676transposon protein, putative, unclassified, expressed
LOC_Os02g10850OsAffx.11982.1.S1_at11/112+5755371..5758098Kelch motif family protein, expressed
LOC_Os02g10860OsAffx.2569.1.S1_s_at11/112+5760633..5763645TGACG-motif binding factor, putative, expressed
LOC_Os02g10860Os.8561.1.S1_at11/112+5760633..5763645TGACG-motif binding factor, putative, expressed
LOC_Os02g10860OsAffx.2569.1.S1_at9/112+5760633..5763645TGACG-motif binding factor, putative, expressed
LOC_Os02g10870OsAffx.2570.1.S1_at11/112+5768300..5768731hypothetical protein
LOC_Os02g10880OsAffx.26224.2.S1_at1/112+5775949..5777385Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os02g10890OsAffx.11983.1.S1_at11/112+5779673..5779987hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11982.1.S1_at--955--7531Chr02:5755930..5755954 (25 bp)
GTGGCCTCAGGTCGGTGGAGGTGTT
LOC_Os02g10850
OsAffx.11982.1.S1_at--52--4371Chr02:5755898..5755922 (25 bp)
GCCAAGAACCGGTGGTCGTTCGTGT
LOC_Os02g10850
OsAffx.11982.1.S1_at--400--8371Chr02:5755863..5755887 (25 bp)
GGCGTCGCTGATGCCGTTCGTCAGC
LOC_Os02g10850
OsAffx.11982.1.S1_at--1094--591Chr02:5755853..5755877 (25 bp)
ATGCCGTTCGTCAGCGCGGTGCACG
LOC_Os02g10850
OsAffx.11982.1.S1_at--222--8871Chr02:5755786..5755810 (25 bp)
TGATGAGCCAGGTGTACTCGCCGGA
LOC_Os02g10850
OsAffx.11982.1.S1_at--321--4591Chr02:5755742..5755766 (25 bp)
GCGCACGAGCTCGATGCCATGGTGA
LOC_Os02g10850
OsAffx.11982.1.S1_at--6--3351Chr02:5755739..5755763 (25 bp)
CACGAGCTCGATGCCATGGTGACCG
LOC_Os02g10850
OsAffx.11982.1.S1_at--481--4231Chr02:5755669..5755693 (25 bp)
CCGACTGCAAGGACGGGTGCCGCCT
LOC_Os02g10850
OsAffx.11982.1.S1_at--629--1911Chr02:5755540..5755564 (25 bp)
ACGGGAAGCTCTGCGTCGTCCGGAA
LOC_Os02g10850
OsAffx.11982.1.S1_at--776--9391Chr02:5755525..5755549 (25 bp)
TCGTCCGGAACGACATGAGCGTCTC
LOC_Os02g10850
OsAffx.11982.1.S1_at--268--8171Chr02:5755519..5755543 (25 bp)
GGAACGACATGAGCGTCTCCGTCGT
LOC_Os02g10850
Target Sequence 
GTGGCCTCAGGTCGGTGGAGGTGTTCGACCCGGCCAAGAACCGGTGGTCGTTCGTGTCCGACATGGCGGCGTCGCTGATG
CCGTTCGTCAGCGCGGTGCACGGCGGGAGGTGGTACGTGAAGGGGCTGGGCGCGCAGCGGCAGGTGATGAGCCAGGTGTA
CTCGCCGGAGGCGGACGCGTGGTCGGCGGCGCACGAGCTCGATGCCATGGTGACCGGGTGGAGGAGCCCGAGCGCGTCGC
TCGGCGGCCGCCTCTACGCCGCCGACTGCAAGGACGGGTGCCGCCTGCGCGCCTACGACGAGGCCGCCGGCGCGTGGAGC
GGCCGCGTCGACGGCGGGCAGCACGCGGGGAGCTCCCACGCGGTGGAGGCGGCCGCCATGGTCGCCCTCCACGGGAAGCT
CTGCGTCGTCCGGAACGACATGAGCGTCTCCGTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11982.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis