Browse Element(s) Details


OsAffx.14035.1.S1_at

Description tigr:9632.m02815
TID=OsAffx.14035.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2974010/11Protein kinase domain containing protein
LOC_Os02g107701/11DEAD/DEAH box helicase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g29730OsAffx.26234.1.S1_at11/114+17531127..17532046hypothetical protein
LOC_Os04g29740OsAffx.14035.1.S1_at10/114+17534440..17540106Protein kinase domain containing protein
LOC_Os04g29740OsAffx.9066.1.S1_x_at1/114+17534440..17540106Protein kinase domain containing protein
LOC_Os04g29750OsAffx.26235.1.S1_at10/114+17542251..17543330hypothetical protein
LOC_Os04g29760OsAffx.26236.1.S1_at11/114+17546772..17547389hypothetical protein
LOC_Os04g29770OsAffx.26237.1.S1_at11/114+17552218..17554484Protein kinase domain containing protein
LOC_Os04g29780Os.2987.3.S1_x_at1/114+17559117..17561136retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g29790OsAffx.26238.1.S1_at11/114+17564846..17569114hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0008026molecular_functionATP-dependent helicase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14035.1.S1_at--350--9552Chr04:17536621..17536645 (25 bp)
TCTATCTATTTATTTCCTTTATGAG
LOC_Os04g29740
OsAffx.14035.1.S1_at--753--8391Chr04:17536586..17536610 (25 bp)
GGCCAATTACTGAGATAGTTGCCCC
LOC_Os04g29740
OsAffx.14035.1.S1_at--1046--2251Chr04:17536528..17536552 (25 bp)
AAATACAGTTGCCTCTATCGCACAG
LOC_Os04g29740
OsAffx.14035.1.S1_at--130--7851Chr04:17536410..17536434 (25 bp)
GGTACCAGCCCAGAAAGCAATCATG
LOC_Os04g29740
OsAffx.14035.1.S1_at--137--3071Chr04:17536392..17536416 (25 bp)
AATCATGGGATGCAACCAGCCCTAT
LOC_Os04g29740
OsAffx.14035.1.S1_at--305--2651Chr04:17536379..17536403 (25 bp)
AACCAGCCCTATCCGAAACATATGT
LOC_Os04g29740
OsAffx.14035.1.S1_at--604--271Chr04:17536360..17536384 (25 bp)
ATATGTAAATCTGCATCAGCCTCTT
LOC_Os04g29740
OsAffx.14035.1.S1_at--399--4971Chr04:17536348..17536372 (25 bp)
GCATCAGCCTCTTGGAGTTCATACA
LOC_Os04g29740
OsAffx.14035.1.S1_at--809--4951Chr04:17536305..17536329 (25 bp)
GCATCTTCAAACTGCAATAGCTTGC
LOC_Os04g29740
OsAffx.14035.1.S1_at--40--10131Chr04:17536271..17536294 (24 bp)
TATGTTATCCGCTAGTTTCGCAAGT
LOC_Os04g29740
OsAffx.14035.1.S1_at--76--10051NONE
TAGTTTCGCAAGTCCCTATACTTTG
NONE
Target Sequence 
TCTATCTATTTATTTCCTTTATGAGATAAAAGGAAGGCCAATTACTGAGATAGTTGCCCCTGAAGTTCTTGAGGAAGCGA
CCGAGGATGAGATAAATACAGTTGCCTCTATCGCACAGGCATGCTTGAGGCTCCGAGGTGAAGAAAGGCCAACTATGAAG
CAAGTGGAAATGTCATTACAATCTGTAAGAAATAAAGGTTTCAGTTCAGCTGGTACCAGCCCAGAAAGCAATCATGGGAT
GCAACCAGCCCTATCCGAAACATATGTAAATCTGCATCAGCCTCTTGGAGTTCATACAATTGGTATAATTAATTTAGCAT
CTTCAAACTGCAATAGCTTGCAGCAAGAATTTATGTTATCCGCTAGTTTCGCAAGTCCCTATACTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14035.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis