Browse Element(s) Details


OsAffx.26235.1.S1_at

Description tigr:9632.m02816
TID=OsAffx.26235.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2975010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g29730OsAffx.26234.1.S1_at11/114+17531127..17532046hypothetical protein
LOC_Os04g29740OsAffx.14035.1.S1_at10/114+17534440..17540106Protein kinase domain containing protein
LOC_Os04g29740OsAffx.9066.1.S1_x_at1/114+17534440..17540106Protein kinase domain containing protein
LOC_Os04g29750OsAffx.26235.1.S1_at10/114+17542251..17543330hypothetical protein
LOC_Os04g29760OsAffx.26236.1.S1_at11/114+17546772..17547389hypothetical protein
LOC_Os04g29770OsAffx.26237.1.S1_at11/114+17552218..17554484Protein kinase domain containing protein
LOC_Os04g29780Os.2987.3.S1_x_at1/114+17559117..17561136retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g29790OsAffx.26238.1.S1_at11/114+17564846..17569114hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26235.1.S1_at--433--5531Chr04:17542286..17542310 (25 bp)
GAAACAGACCCGTACTCGGACTCTG
LOC_Os04g29750
OsAffx.26235.1.S1_at--847--8111NONE
GGACTCTGCCGGTATACCACGAGAA
NONE
OsAffx.26235.1.S1_at--139--8051Chr04:17543022..17543046 (25 bp)
GGAGAACCTTCGACCGGGCCTACTG
LOC_Os04g29750
OsAffx.26235.1.S1_at--348--4111Chr04:17543089..17543113 (25 bp)
CGAAGGTCGAAGAGACAGCATCGGT
LOC_Os04g29750
OsAffx.26235.1.S1_at--1155--1531Chr04:17543105..17543129 (25 bp)
AGCATCGGTGAAAGCCAAACGGCAA
LOC_Os04g29750
OsAffx.26235.1.S1_at--857--2351Chr04:17543129..17543153 (25 bp)
AAAGCCGTGGCATCGAGTTGACCAG
LOC_Os04g29750
OsAffx.26235.1.S1_at--672--5851Chr04:17543148..17543172 (25 bp)
GACCAGCTTCGCCAAAGAAGGACCC
LOC_Os04g29750
OsAffx.26235.1.S1_at--253--2732Chr11:12696175..12696194 (20 bp)
AAGAAGGACCCTGCCGGAGGAGCAT
NONE
OsAffx.26235.1.S1_at--1048--4251Chr04:17543171..17543195 (25 bp)
CCTGCCGGAGGAGCATACGGTTGAA
LOC_Os04g29750
OsAffx.26235.1.S1_at--180--6811Chr04:17543232..17543256 (25 bp)
GTTTTGCCAAGTATCAAACCTTGCA
LOC_Os04g29750
OsAffx.26235.1.S1_at--392--4351Chr04:17543267..17543291 (25 bp)
CCAGCGGGCTAACATGCCTTCTAGA
LOC_Os04g29750
Target Sequence 
GAAACAGACCCGTACTCGGACTCTGCCGGTATACCACGAGAACCTTCGGCCGGGAGAACCTTCGACCGGGCCTACTGAAA
CCAAGGACATAAGCAAAGGCGCGGGCTGGAGGCAAGCGGCGAAGGTCGAAGAGACAGCATCGGTGAAAGCCAAACGGCAA
AAGCCGTGGCATCGAGTTGACCAGCTTCGCCAAAGAAGGACCCTGCCGGAGGAGCATACGGTTGAAAGCCGTGAGGGGAA
AGCCTTGCCACGAAGGGCATGGGTTTTGCCAAGTATCAAACCTTGCAAGGAGAAGGCCCAGCGGGCTAACATGCCTTCTA
GA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26235.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis