Browse Element(s) Details


OsAffx.26238.1.S1_at

Description tigr:9632.m02820
TID=OsAffx.26238.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2979011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g29740OsAffx.14035.1.S1_at10/114+17534440..17540106Protein kinase domain containing protein
LOC_Os04g29740OsAffx.9066.1.S1_x_at1/114+17534440..17540106Protein kinase domain containing protein
LOC_Os04g29750OsAffx.26235.1.S1_at10/114+17542251..17543330hypothetical protein
LOC_Os04g29760OsAffx.26236.1.S1_at11/114+17546772..17547389hypothetical protein
LOC_Os04g29770OsAffx.26237.1.S1_at11/114+17552218..17554484Protein kinase domain containing protein
LOC_Os04g29780Os.2987.3.S1_x_at1/114+17559117..17561136retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g29790OsAffx.26238.1.S1_at11/114+17564846..17569114hypothetical protein
LOC_Os04g29800OsAffx.14848.1.S1_at1/114+17571210..17574892retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g29810OsAffx.14036.1.S1_at11/114+17577644..17579050hypothetical protein
LOC_Os04g29820Os.47463.1.S1_x_at1/114+17587098..17590833transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g29820Os.14491.2.S1_x_at1/114+17587098..17590833transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g29830NANA4+17593642..17597084transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26238.1.S1_at--262--11Chr04:17565294..17565318 (25 bp)
AGAAGGCAAACTGTTCCCGGTCATG
LOC_Os04g29790
OsAffx.26238.1.S1_at--1140--3091Chr04:17565265..17565289 (25 bp)
AATATCACAGTTCCCTATCCATTTG
LOC_Os04g29790
OsAffx.26238.1.S1_at--366--5531Chr04:17565216..17565240 (25 bp)
GAAAACTATTCCATCTCAACTGCAC
LOC_Os04g29790
OsAffx.26238.1.S1_at--668--2391Chr04:17565185..17565209 (25 bp)
AAACTCTTCAACTCTGCGATTCGAC
LOC_Os04g29790
OsAffx.26238.1.S1_at--970--851Chr04:17565042..17565066 (25 bp)
ATGGCTCTTGGGATTACTCTATCTC
LOC_Os04g29790
OsAffx.26238.1.S1_at--1036--1991Chr04:17565027..17565051 (25 bp)
ACTCTATCTCTGTTGGATGGGCTGT
LOC_Os04g29790
OsAffx.26238.1.S1_at--479--8811Chr04:17565005..17565029 (25 bp)
TGTTGCCAATCTAACATGCCTGGAA
LOC_Os04g29790
OsAffx.26238.1.S1_at--309--5271Chr04:17564972..17564996 (25 bp)
GAATGCCTCTGGATATGCATGCGTT
LOC_Os04g29790
OsAffx.26238.1.S1_at--148--8671Chr04:17564932..17564956 (25 bp)
TGTGTTCCAGTGAACTCTACTTCTG
LOC_Os04g29790
OsAffx.26238.1.S1_at--782--10591Chr04:17564912..17564936 (25 bp)
TTCTGGTTATGTTGGCTATCGGTGC
LOC_Os04g29790
OsAffx.26238.1.S1_at--920--1971Chr04:17564886..17564910 (25 bp)
ACTGCACTGCCGGTTTTCATGGAAA
LOC_Os04g29790
Target Sequence 
AGAAGGCAAACTGTTCCCGGTCATGTGGGAATATCACAGTTCCCTATCCATTTGGTCTCGAAGAAGGTTGTTTTGCCAGA
AAACTATTCCATCTCAACTGCACAGAAGCAAACTCTTCAACTCTGCGATTCGACAAGTATAATCAGGTGACTGACATCAA
AATTGAGGAAGGAGTTGTGCTGATTAAATATGACGCTGGTGGTGGTGGTGATCAGGAGTTTATGGCGATAGACGGAGAAC
CACATCTATATGATGGCTCTTGGGATTACTCTATCTCTGTTGGATGGGCTGTTGCCAATCTAACATGCCTGGAAGCAAAA
CAGAATGCCTCTGGATATGCATGCGTTAGTACTAACAGCACTTGTGTTCCAGTGAACTCTACTTCTGGTTATGTTGGCTA
TCGGTGCAACTGCACTGCCGGTTTTCATGGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26238.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis