Browse Element(s) Details


OsAffx.14036.1.S1_at

Description tigr:9632.m02822
TID=OsAffx.14036.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2981011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g29770OsAffx.26237.1.S1_at11/114+17552218..17554484Protein kinase domain containing protein
LOC_Os04g29780Os.2987.3.S1_x_at1/114+17559117..17561136retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g29790OsAffx.26238.1.S1_at11/114+17564846..17569114hypothetical protein
LOC_Os04g29800OsAffx.14848.1.S1_at1/114+17571210..17574892retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g29810OsAffx.14036.1.S1_at11/114+17577644..17579050hypothetical protein
LOC_Os04g29820Os.47463.1.S1_x_at1/114+17587098..17590833transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g29820Os.14491.2.S1_x_at1/114+17587098..17590833transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g29830NANA4+17593642..17597084transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g29840OsAffx.26239.1.S1_at11/114+17603608..17604018hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14036.1.S1_at--636--5671Chr04:17578907..17578931 (25 bp)
GACATTTGAGTATCCCTTTGGCATC
LOC_Os04g29810
OsAffx.14036.1.S1_at--723--2591Chr04:17578863..17578887 (25 bp)
AACCCAATTTTGAGCTCACTTGCCT
LOC_Os04g29810
OsAffx.14036.1.S1_at--40--6091Chr04:17578814..17578838 (25 bp)
GAGTCTCTTTTTACAGGGCGGCACC
LOC_Os04g29810
OsAffx.14036.1.S1_at--524--1851Chr04:17578779..17578803 (25 bp)
ACGACATCGTTGTCAGCTCTTCGGA
LOC_Os04g29810
OsAffx.14036.1.S1_at--598--2451Chr04:17578750..17578774 (25 bp)
AACAACGTCCCTAGTGTTAGCGTCA
LOC_Os04g29810
OsAffx.14036.1.S1_at--541--10331Chr04:17578686..17578710 (25 bp)
TTTACAACTATACCTGGACCTATCC
LOC_Os04g29810
OsAffx.14036.1.S1_at--592--4891Chr04:17578656..17578680 (25 bp)
GCTTTTTTCCATTATATGCCACGGT
LOC_Os04g29810
OsAffx.14036.1.S1_at--1023--2251Chr04:17578629..17578653 (25 bp)
AAATCACCGGTTGCGACTTCGATGT
LOC_Os04g29810
OsAffx.14036.1.S1_at--175--1171Chr04:17578593..17578617 (25 bp)
AGTACAACGAATCCATGCTCCTATG
LOC_Os04g29810
OsAffx.14036.1.S1_at--203--1431Chr04:17578259..17578545 (25 bp)
AGAACTGCAACGCTGCGATTCTGGC
LOC_Os04g29810
OsAffx.14036.1.S1_at--1128--1071Chr04:17578213..17578233 (21 bp)
AGGGCTGCTCTCGTGACAAAGACAA
LOC_Os04g29810
Target Sequence 
GACATTTGAGTATCCCTTTGGCATCGGGCAAGGCTGCTTCCGCCAACCCAATTTTGAGCTCACTTGCCTCCACGGCAATC
ACCTCCAGCCACCGAGTCTCTTTTTACAGGGCGGCACCCAGGTTGTCGACGACATCGTTGTCAGCTCTTCGGACGACAAC
AACGTCCCTAGTGTTAGCGTCAGCATGTCCGACACCATCTCTGTGGTGCCCGGCGTCGATGTTTACAACTATACCTGGAC
CTATCCTGAAAGCTTTTTTCCATTATATGCCACGGTGCAAATCACCGGTTGCGACTTCGATGTATACTTTATCCAGTACA
ACGAATCCATGCTCCTATGCAACATTACATGTCCCAACGAAATATTTACAGAAGGCGAGGCCAAGAAGAACTGCAACGCT
GCGATTCTGGCTTTGCAGGAAATCCCTATATTTCGCAGGGCTGCTCTCGTGACAAAGACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14036.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis