Browse Element(s) Details


OsAffx.14848.1.S1_at

Description tigr:9633.m02488
TID=OsAffx.14848.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2738011/11hypothetical protein
LOC_Os09g169301/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g298001/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g27350Os.56345.1.S1_at9/115+15816894..15818029hypothetical protein
LOC_Os05g27360NANA5+15830651..15831136hypothetical protein
LOC_Os05g27370OsAffx.27041.1.S1_at4/115+15840097..15840857hypothetical protein
LOC_Os05g27380OsAffx.14848.1.S1_at11/115+15841681..15842322hypothetical protein
LOC_Os05g27390NANA5+15842869..15844425hypothetical protein
LOC_Os05g27400Os.1709.1.S1_x_at6/115+15845671..15850310retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g27410OsAffx.31070.2.S1_x_at1/115+15858849..15861025retrotransposon protein, putative, unclassified
LOC_Os05g27420NANA5+15862778..15863659retrotransposon protein, putative, unclassified
LOC_Os05g27430NANA5+15864931..15868805transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14848.1.S1_at--190--6791Chr05:15841879..15841903 (25 bp)
GTTATCGTTTCGACAACAGACATAT
LOC_Os05g27380
OsAffx.14848.1.S1_at--441--3711Chr05:15841851..15841875 (25 bp)
CTAGATGGTCTAATGCGTGTCTTCT
LOC_Os05g27380
OsAffx.14848.1.S1_at--1109--9751Chr05:15841841..15841865 (25 bp)
TAATGCGTGTCTTCTATCGACATGA
LOC_Os05g27380
OsAffx.14848.1.S1_at--790--2093Chr04:17572562..17572581 (20 bp)
ACATGAAACCATGCCTTTGCTAACG
LOC_Os04g29800
OsAffx.14848.1.S1_at--862--592Chr05:15841812..15841836 (25 bp)
ATGCCTTTGCTAACGAAATATCTCA
LOC_Os05g27380
OsAffx.14848.1.S1_at--518--6651Chr05:15841783..15841807 (25 bp)
GTTGATTGCTATCAAGTTGATCCAG
LOC_Os05g27380
OsAffx.14848.1.S1_at--673--6651Chr05:15841768..15841792 (25 bp)
GTTGATCCAGAACCTAACTCTGACT
LOC_Os05g27380
OsAffx.14848.1.S1_at--875--3731Chr05:15841755..15841779 (25 bp)
CTAACTCTGACTAGTGTGGCAGCAT
LOC_Os05g27380
OsAffx.14848.1.S1_at--177--8671Chr05:15841741..15841765 (25 bp)
TGTGGCAGCATTATTTGGTCACGCT
LOC_Os05g27380
OsAffx.14848.1.S1_at--762--211Chr05:15841729..15841753 (25 bp)
ATTTGGTCACGCTGGTTTGGCTAGA
LOC_Os05g27380
OsAffx.14848.1.S1_at--108--10231Chr05:15841714..15841738 (25 bp)
TTTGGCTAGAGTGGTAGCGCTATTT
LOC_Os05g27380
Target Sequence 
GTTATCGTTTCGACAACAGACATATCTACTAGATGGTCTAATGCGTGTCTTCTATCGACATGAAACCATGCCTTTGCTAA
CGAAATATCTCAAATTGTTGATTGCTATCAAGTTGATCCAGAACCTAACTCTGACTAGTGTGGCAGCATTATTTGGTCAC
GCTGGTTTGGCTAGAGTGGTAGCGCTATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14848.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis