Browse Element(s) Details


OsAffx.26236.1.S1_at

Description tigr:9632.m02817
TID=OsAffx.26236.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2976011/11hypothetical protein
LOC_Os01g055803/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g29730OsAffx.26234.1.S1_at11/114+17531127..17532046hypothetical protein
LOC_Os04g29740OsAffx.14035.1.S1_at10/114+17534440..17540106Protein kinase domain containing protein
LOC_Os04g29740OsAffx.9066.1.S1_x_at1/114+17534440..17540106Protein kinase domain containing protein
LOC_Os04g29750OsAffx.26235.1.S1_at10/114+17542251..17543330hypothetical protein
LOC_Os04g29760OsAffx.26236.1.S1_at11/114+17546772..17547389hypothetical protein
LOC_Os04g29770OsAffx.26237.1.S1_at11/114+17552218..17554484Protein kinase domain containing protein
LOC_Os04g29780Os.2987.3.S1_x_at1/114+17559117..17561136retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g29790OsAffx.26238.1.S1_at11/114+17564846..17569114hypothetical protein
LOC_Os04g29800OsAffx.14848.1.S1_at1/114+17571210..17574892retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26236.1.S1_at--607--3731Chr04:17546804..17546828 (25 bp)
CTACATCATGCTCGGAATGTACGGG
LOC_Os04g29760
OsAffx.26236.1.S1_at--512--512Chr10:13726182..13726206 (25 bp)
ATCGACGTCAAGTCGGACCTCAAAT
NONE
OsAffx.26236.1.S1_at--178--2852Chr10:13726191..13726215 (25 bp)
AAGTCGGACCTCAAATCCCTCTTCA
NONE
OsAffx.26236.1.S1_at--316--9672Chr10:13726213..13726269 (25 bp)
TCACCGGATACGCACCGCCATTTAT
NONE
OsAffx.26236.1.S1_at--669--5093Chr10:13726259..13726280 (22 bp)
GCACCGCCATTTATCGATGCAGTTT
NONE
OsAffx.26236.1.S1_at--1125--7192Chr04:17546983..17547007 (25 bp)
GTCGTGTCGCCACGCCATCAGAGGC
LOC_Os04g29760
OsAffx.26236.1.S1_at--156--412Chr04:17546999..17547023 (25 bp)
ATCAGAGGCTGTTGCTAGTGCTCCT
LOC_Os04g29760
OsAffx.26236.1.S1_at--369--8111Chr04:17547259..17547283 (25 bp)
GGACCCACACCGAGTCAGATGCCAA
LOC_Os04g29760
OsAffx.26236.1.S1_at--454--1791Chr04:17547267..17547291 (25 bp)
ACCGAGTCAGATGCCAAGTCAGATA
LOC_Os04g29760
OsAffx.26236.1.S1_at--1135--9311Chr04:17547307..17547331 (25 bp)
TCGCCCGAGGGCCAAAAGTGATCCG
LOC_Os04g29760
OsAffx.26236.1.S1_at--970--6372Chr04:17547326..17547350 (25 bp)
GATCCGGTTTTGTAAGATGAGCGAT
LOC_Os04g29760
Target Sequence 
CTACATCATGCTCGGAATGTACGGGGCGCTCATCGACGTCAAGTCGGACCTCAAATCCCTCTTCACCGGATACGCACCGC
CATTTATCGATGCAGTTTTCGATAAGAATAAGGGAAGGGGAGGGGAGGAGGCAGCGTCGGGACGGGGGCTTCGTCGGGGC
TCCCCGTGTCACCGCCGTCGTCGTGTCGCCACGCCATCAGAGGCTGTTGCTAGTGCTCCTCCCCGTCGCCTGCGCCCGTC
ACTCGCGCCCAGATACTCCCCCGCCGCCTGCGCCCGCCAGCCGCACCTAGCTGCTCCCCTGCCGGCCACCAGCCGCACCC
AGCTGCTCCCCCGCTGCCGCCCGCGCCCGCCGGCGCACCGAACTGCTCCGCAGTCCCGCCCGAGGAGAGGGAAGGAGAGA
GCAAGAGAGGTGGAGAGGGGAGAGAAAGATGAGGATGACGTGTGGGGCCCATGTGGGACCCACACCGAGTCAGATGCCAA
GTCAGATAAAATCGGAGTCAAAATCGCCCGAGGGCCAAAAGTGATCCGGTTTTGTAAGATGAGCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26236.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis