Browse Element(s) Details

Os.10311.1.S1_a_at

Description

gb:AK066241.1
DB_XREF= gi:32976259
TID=Os.10311.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10311 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033034J11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013052J08, full insert sequence.
FL= gb:AK066241.1 gb:AK065756.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g14324	11/11	Calcium binding EF-hand protein, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g14270	OsAffx.27632.1.S1_at	11/11	6	+	7959790..7960936	hypothetical protein
LOC_Os06g14280	OsAffx.27633.1.S1_at	11/11	6	+	7962962..7966745	33 kDa secretory protein, putative, expressed
LOC_Os06g14290	Os.35344.18.S1_x_at	10/11	6	+	7971114..7976885	transposon protein, putative, Mutator sub-class
LOC_Os06g14290	Os.35344.3.S1_x_at	9/11	6	+	7971114..7976885	transposon protein, putative, Mutator sub-class
LOC_Os06g14290	OsAffx.22940.5.S1_x_at	3/11	6	+	7971114..7976885	transposon protein, putative, Mutator sub-class
LOC_Os06g14300	NA	NA	6	+	7978497..7980136	transposon protein, putative, unclassified
LOC_Os06g14310	OsAffx.15422.2.S1_at	11/11	6	+	7981085..7982860	cation channel family protein
LOC_Os06g14324	Os.10311.1.S1_a_at	11/11	6	+	7982957..7989957	Calcium binding EF-hand protein, putative, expressed
LOC_Os06g14324	Os.10311.2.A1_s_at	10/11	6	+	7982957..7989957	Calcium binding EF-hand protein, putative, expressed
LOC_Os06g14324	Os.10311.2.A1_x_at	9/11	6	+	7982957..7989957	Calcium binding EF-hand protein, putative, expressed
LOC_Os06g14324	Os.24876.1.S1_s_at	5/11	6	+	7982957..7989957	Calcium binding EF-hand protein, putative, expressed
LOC_Os06g14324	OsAffx.14652.1.S1_at	1/11	6	+	7982957..7989957	Calcium binding EF-hand protein, putative, expressed
LOC_Os06g14324	OsAffx.27197.1.S1_at	1/11	6	+	7982957..7989957	Calcium binding EF-hand protein, putative, expressed
LOC_Os06g14340	OsAffx.15423.1.S1_at	11/11	6	+	7991023..7991745	hypothetical protein
LOC_Os06g14350	Os.24876.1.S1_at	11/11	6	+	7995913..8003843	Calcium binding EF-hand protein, putative, expressed
LOC_Os06g14350	Os.24876.1.S1_s_at	10/11	6	+	7995913..8003843	Calcium binding EF-hand protein, putative, expressed
LOC_Os06g14350	Os.10311.2.A1_s_at	10/11	6	+	7995913..8003843	Calcium binding EF-hand protein, putative, expressed
LOC_Os06g14350	Os.10311.2.A1_x_at	1/11	6	+	7995913..8003843	Calcium binding EF-hand protein, putative, expressed
LOC_Os06g14370	Os.26592.1.S2_at	11/11	6	+	8010878..8013835	ABA-induced protein, putative, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0009269	biological_process	response to desiccation
GO:0009651	biological_process	response to salt stress
GO:0009737	biological_process	response to abscisic acid stimulus
GO:0009793	biological_process	embryonic development (sensu Magnoliophyta)
GO:0005576	cellular_component	extracellular region
GO:0005509	molecular_function	calcium ion binding
GO:0016298	molecular_function	lipase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.10311.1.S1_a_at--608--547	1	Chr06:7985382..7985406 (25 bp)	GAACATCTATAAAGGAATGCACGGG	LOC_Os06g14324
Os.10311.1.S1_a_at--431--963	1	Chr06:7983348..7983368 (21 bp)	TCATGGGCTGCACCTATACAGGAGT	LOC_Os06g14324
Os.10311.1.S1_a_at--401--351	1	Chr06:7983347..7983368 (22 bp)	CATGGGCTGCACCTATACAGGAGTG	LOC_Os06g14324
Os.10311.1.S1_a_at--759--79	1	Chr06:7983346..7983368 (23 bp)	ATGGGCTGCACCTATACAGGAGTGG	LOC_Os06g14324
Os.10311.1.S1_a_at--582--1021	1	Chr06:7983002..7983026 (25 bp)	TATTATGTATATACGGATGCACTCT	LOC_Os06g14324
Os.10311.1.S1_a_at--43--1013	1	Chr06:7982999..7983023 (25 bp)	TATGTATATACGGATGCACTCTTAA	LOC_Os06g14324
Os.10311.1.S1_a_at--60--75	1	Chr06:7982998..7983022 (25 bp)	ATGTATATACGGATGCACTCTTAAT	LOC_Os06g14324
Os.10311.1.S1_a_at--574--877	1	Chr06:7982997..7983021 (25 bp)	TGTATATACGGATGCACTCTTAATA	LOC_Os06g14324
Os.10311.1.S1_a_at--1162--687	1	Chr06:7982996..7983020 (25 bp)	GTATATACGGATGCACTCTTAATAA	LOC_Os06g14324
Os.10311.1.S1_a_at--1080--1017	1	Chr06:7982995..7983019 (25 bp)	TATATACGGATGCACTCTTAATAAG	LOC_Os06g14324
Os.10311.1.S1_a_at--24--653	1	Chr06:7982971..7982995 (25 bp)	GATTTGAGAAAACCTATTTTATATC	LOC_Os06g14324

Target Sequence

GAACATCTATAAAGGAATGCACGGGAGTGACACAGGTGCACTAGATGCTAAAGGAAGGTTTGTTCCTGCAAAGTTTGAGG
AAATTTTCTCGAAACACGCAAAAAATAGACCAGATGCATTAACATCCTTGGAGGTCAAAGAGATGATTCTAGCAAATCGA
GATCCAGATGACCCACAATCATGGGCTGCACCTATACAGGAGTGGGGGCTAATTTATGGTCTTGCAAGTGATAAGAACGG
ATATTTTCACAAGGATAGTGTGAGAGGTATATATGATGGTAGTGTGTTCGTCAAGTTGGAGGAAGAGAGGGCATCTTCAC
AAAGTACAGTTTGCCGGAGCCTATCATTTAGGAGTACTGTATAAAGTAATTGGGAAATGAAGTTATCCCAAATACATTGT
ATTGCATCATAGGTATTGTTCGTGTACTTACAAAATGCCATATTTGGAGAAGCACTGGTGTATGGTAGTGGAGTTATAGT
TGCATGACTTTAATCATTATGATTTAAATCTTGGTTTATATGAATATTATGTATATACGGATGCACTCTTAATAAGATTT
GAGAAAACCTATTTTATATC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis