Browse Element(s) Details

Os.24876.1.S1_s_at

Description

gb:AK071531.1
DB_XREF= gi:32981554
TID=Os.24876.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24876 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023102I11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023102I11, full insert sequence.
FL= gb:AK071531.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g14350	10/11	Calcium binding EF-hand protein, putative, expressed
LOC_Os06g14324	5/11	Calcium binding EF-hand protein, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g14290	Os.35344.18.S1_x_at	10/11	6	+	7971114..7976885	transposon protein, putative, Mutator sub-class
LOC_Os06g14290	Os.35344.3.S1_x_at	9/11	6	+	7971114..7976885	transposon protein, putative, Mutator sub-class
LOC_Os06g14290	OsAffx.22940.5.S1_x_at	3/11	6	+	7971114..7976885	transposon protein, putative, Mutator sub-class
LOC_Os06g14300	NA	NA	6	+	7978497..7980136	transposon protein, putative, unclassified
LOC_Os06g14310	OsAffx.15422.2.S1_at	11/11	6	+	7981085..7982860	cation channel family protein
LOC_Os06g14324	Os.10311.1.S1_a_at	11/11	6	+	7982957..7989957	Calcium binding EF-hand protein, putative, expressed
LOC_Os06g14324	Os.10311.2.A1_s_at	10/11	6	+	7982957..7989957	Calcium binding EF-hand protein, putative, expressed
LOC_Os06g14324	Os.10311.2.A1_x_at	9/11	6	+	7982957..7989957	Calcium binding EF-hand protein, putative, expressed
LOC_Os06g14324	Os.24876.1.S1_s_at	5/11	6	+	7982957..7989957	Calcium binding EF-hand protein, putative, expressed
LOC_Os06g14324	OsAffx.14652.1.S1_at	1/11	6	+	7982957..7989957	Calcium binding EF-hand protein, putative, expressed
LOC_Os06g14324	OsAffx.27197.1.S1_at	1/11	6	+	7982957..7989957	Calcium binding EF-hand protein, putative, expressed
LOC_Os06g14340	OsAffx.15423.1.S1_at	11/11	6	+	7991023..7991745	hypothetical protein
LOC_Os06g14350	Os.24876.1.S1_at	11/11	6	+	7995913..8003843	Calcium binding EF-hand protein, putative, expressed
LOC_Os06g14350	Os.24876.1.S1_s_at	10/11	6	+	7995913..8003843	Calcium binding EF-hand protein, putative, expressed
LOC_Os06g14350	Os.10311.2.A1_s_at	10/11	6	+	7995913..8003843	Calcium binding EF-hand protein, putative, expressed
LOC_Os06g14350	Os.10311.2.A1_x_at	1/11	6	+	7995913..8003843	Calcium binding EF-hand protein, putative, expressed
LOC_Os06g14370	Os.26592.1.S2_at	11/11	6	+	8010878..8013835	ABA-induced protein, putative, expressed
LOC_Os06g14379	NA	NA	6	+	8018008..8018908	hypothetical protein

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0009269	biological_process	response to desiccation
GO:0009651	biological_process	response to salt stress
GO:0009737	biological_process	response to abscisic acid stimulus
GO:0009793	biological_process	embryonic development (sensu Magnoliophyta)
GO:0005576	cellular_component	extracellular region
GO:0005509	molecular_function	calcium ion binding
GO:0016298	molecular_function	lipase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.24876.1.S1_s_at--835--511	2	Chr06:7997943..7997967 (25 bp)	GCACAGGAGTGACACAGGTGCACTA	LOC_Os06g14350
Os.24876.1.S1_s_at--146--737	2	Chr06:7997935..7997959 (25 bp)	GTGACACAGGTGCACTAGATGCTAA	LOC_Os06g14350
Os.24876.1.S1_s_at--641--371	1	NONE	CTAGATGCTAAAGGAAGGTTTGTTC	NONE
Os.24876.1.S1_s_at--311--531	2	Chr06:7997033..7997055 (23 bp)	GAAGGTTTGTTCCTGCAAAGTTTGA	LOC_Os06g14350
Os.24876.1.S1_s_at--93--815	1	Chr06:7997008..7997032 (25 bp)	GGAAATATTCTCGAAACACGCAAAA	LOC_Os06g14350
Os.24876.1.S1_s_at--384--1003	1	Chr06:7996981..7997005 (25 bp)	TAGACCAGATGCATTGACATCCTTG	LOC_Os06g14350
Os.24876.1.S1_s_at--475--633	1	Chr06:7996974..7996998 (25 bp)	GATGCATTGACATCCTTGGAGGTCA	LOC_Os06g14350
Os.24876.1.S1_s_at--402--629	2	Chr06:7996945..7996969 (25 bp)	GATGATTCTAGCAAATCGAGATCCA	LOC_Os06g14350
Os.24876.1.S1_s_at--173--603	1	Chr06:7996928..7996952 (25 bp)	GAGATCCAAATGACCCACAATCATG	LOC_Os06g14350
Os.24876.1.S1_s_at--1133--757	1	Chr06:7996264..7996288 (25 bp)	GGGCTAATTTATGGTCTTGCGAGTG	LOC_Os06g14350
Os.24876.1.S1_s_at--240--545	2	Chr06:7996235..7996259 (25 bp)	GAACGGATATTTTCACAAGGATAGT	LOC_Os06g14350

Target Sequence

GCACAGGAGTGACACAGGTGCACTAGATGCTAAAGGAAGGTTTGTTCCTGCAAAGTTTGAGGAAATATTCTCGAAACACG
CAAAAAAATAGACCAGATGCATTGACATCCTTGGAGGTCAAAGAGATGATTCTAGCAAATCGAGATCCAAATGACCCACA
ATCATGGGGTGCAGCTATAAAGGAGTGGGGGCTAATTTATGGTCTTGCGAGTGATAAGAACGGATATTTTCACAAGGATA
GT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis