Browse Element(s) Details

Os.26592.1.S2_at

Description

gb:AK073727.1
DB_XREF= gi:32983750
TID=Os.26592.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.26592 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative Photosystem II P680 chlorophyll A apoprotein (OSJNAb0075K12.30), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033057G06, full insert sequence.
FL= gb:AK059592.1 gb:AK073727.1 gb:AK104598.1 gb:AK060792.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g14370	11/11	ABA-induced protein, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g14324	Os.10311.1.S1_a_at	11/11	6	+	7982957..7989957	Calcium binding EF-hand protein, putative, expressed
LOC_Os06g14324	Os.10311.2.A1_s_at	10/11	6	+	7982957..7989957	Calcium binding EF-hand protein, putative, expressed
LOC_Os06g14324	Os.10311.2.A1_x_at	9/11	6	+	7982957..7989957	Calcium binding EF-hand protein, putative, expressed
LOC_Os06g14324	Os.24876.1.S1_s_at	5/11	6	+	7982957..7989957	Calcium binding EF-hand protein, putative, expressed
LOC_Os06g14324	OsAffx.14652.1.S1_at	1/11	6	+	7982957..7989957	Calcium binding EF-hand protein, putative, expressed
LOC_Os06g14324	OsAffx.27197.1.S1_at	1/11	6	+	7982957..7989957	Calcium binding EF-hand protein, putative, expressed
LOC_Os06g14340	OsAffx.15423.1.S1_at	11/11	6	+	7991023..7991745	hypothetical protein
LOC_Os06g14350	Os.24876.1.S1_at	11/11	6	+	7995913..8003843	Calcium binding EF-hand protein, putative, expressed
LOC_Os06g14350	Os.24876.1.S1_s_at	10/11	6	+	7995913..8003843	Calcium binding EF-hand protein, putative, expressed
LOC_Os06g14350	Os.10311.2.A1_s_at	10/11	6	+	7995913..8003843	Calcium binding EF-hand protein, putative, expressed
LOC_Os06g14350	Os.10311.2.A1_x_at	1/11	6	+	7995913..8003843	Calcium binding EF-hand protein, putative, expressed
LOC_Os06g14370	Os.26592.1.S2_at	11/11	6	+	8010878..8013835	ABA-induced protein, putative, expressed
LOC_Os06g14379	NA	NA	6	+	8018008..8018908	hypothetical protein
LOC_Os06g14390	Os.9690.1.S1_at	11/11	6	+	8030892..8034244	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os06g14400	Os.52934.1.S1_at	11/11	6	+	8037377..8040832	oxidoreductase, 2OG-Fe oxygenase family protein, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0009269	biological_process	response to desiccation
GO:0009651	biological_process	response to salt stress
GO:0009737	biological_process	response to abscisic acid stimulus
GO:0005576	cellular_component	extracellular region
GO:0005509	molecular_function	calcium ion binding
GO:0016298	molecular_function	lipase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.26592.1.S2_at--1058--275	1	Chr06:8012225..8012249 (25 bp)	AAGACTGGTCTCAAGTTACCCATAT	LOC_Os06g14370
Os.26592.1.S2_at--37--501	1	Chr06:8012175..8012199 (25 bp)	GCATGGAAGCGATTCAGGCGTGTAT	LOC_Os06g14370
Os.26592.1.S2_at--651--1051	1	Chr06:8011408..8011432 (25 bp)	TTCAAGAAGCATGCTCACACCAGGC	LOC_Os06g14370
Os.26592.1.S2_at--549--287	1	Chr06:8011357..8011381 (25 bp)	AAGGAGTTGCTCCAATCAAACAGGG	LOC_Os06g14370
Os.26592.1.S2_at--767--329	1	Chr06:8011219..8011343 (25 bp)	CAAAGGATGGTTGGGTGGCTTCACA	LOC_Os06g14370
Os.26592.1.S2_at--703--283	1	Chr06:8011187..8011211 (25 bp)	AAGTATTGTACTACCTCTGCAAAGA	LOC_Os06g14370
Os.26592.1.S2_at--752--793	1	Chr06:8011155..8011179 (25 bp)	GGATTTCTTCACAAGGATACTGTCA	LOC_Os06g14370
Os.26592.1.S2_at--782--583	1	Chr06:8011059..8011083 (25 bp)	GACCATACTGGGTGCTGTAATTATC	LOC_Os06g14370
Os.26592.1.S2_at--930--1025	1	Chr06:8010972..8010996 (25 bp)	TTTGATTGCGCGTGTTTGTTGACCC	LOC_Os06g14370
Os.26592.1.S2_at--1136--663	1	Chr06:8010955..8010979 (25 bp)	GTTGACCCGTTCCTGTAACAAGAAG	LOC_Os06g14370
Os.26592.1.S2_at--136--983	1	Chr06:8010902..8010926 (25 bp)	TAAACATGGTGGTATCCTCTGATTT	LOC_Os06g14370

Target Sequence

AAGACTGGTCTCAAGTTACCCATATACGTCAAGAACATCCACAAAGGCAAGCATGGAAGCGATTCAGGCGTGTATGATGC
GAATGGAAGGTTTGTCCCAGAAAAGTTCGAGGAAATATTCAAGAAGCATGCTCACACCAGGCCNTGATGCCCTAACAGAC
AAAGAGCTGAAGGAGTTGCTCCAATCAAACAGGGAGCCTAAAGATTTCAAAGGATGGTTGGGTGGCTTCACAGAGTGGAA
AGTATTGTACTACCTCTGCAAAGACAAGGATGGATTTCTTCACAAGGATACTGTCAGGGCAGTCTATGATGGAAGCCTAT
TTGCAAAGATGGAGCAAGAGAAGCAGTCTGCTAAGAAGAAATGATAAGACCATACTGGGTGCTGTAATTATCTGTTATTG
TTGCAGGTGATTGTAAATTACGGTGTGGGTGTGAATCCAAAATTATTGCTGTAGTTTGATTGCGCGTGTTTGTTGACCCG
TTCCTGTAACAAGAAGCTATTTGTGAAGTTATTGGAAGTGTTTGTAAACATGGTGGTATCCTCTGATTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis